Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1cc' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6771727-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.70 PID: 6751 Logging PID: 6752 Task: {'appstream': False, 'background': True, 'build_id': 6771727, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '3c0c4a1bb9a0d86619216349512895c98d300cec', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/vondruch/mpb.checker/libsbml', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'libsbml', 'package_version': '5.20.2-2', 'project_dirname': 'mpb.checker', 'project_name': 'mpb.checker', 'project_owner': 'vondruch', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/vondruch/mpb.checker/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'vondruch/mpb.checker--vondruch', 'source_json': {}, 'source_type': None, 'submitter': 'vondruch', 'tags': [], 'task_id': '6771727-fedora-rawhide-x86_64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/vondruch/mpb.checker/libsbml /var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/vondruch/mpb.checker/libsbml', '/var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml'... Running: git checkout 3c0c4a1bb9a0d86619216349512895c98d300cec -- cmd: ['git', 'checkout', '3c0c4a1bb9a0d86619216349512895c98d300cec', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml rc: 0 stdout: stderr: Note: switching to '3c0c4a1bb9a0d86619216349512895c98d300cec'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 3c0c4a1 automatic import of libsbml Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml rc: 0 stdout: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading libsbml-5.20.2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o libsbml-5.20.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/vondruch/mpb.checker/libsbml/libsbml-5.20.2.tar.gz/md5/2c3955b44610f3b757406f59824606a8/libsbml-5.20.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 27.4M 100 27.4M 0 0 4677k 0 0:00:06 0:00:06 --:--:-- 4983k INFO: Reading stdout from command: md5sum libsbml-5.20.2.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml/libsbml.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1703045989.375956 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml/libsbml.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1703045989.375956 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml/libsbml.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1703045989.375956/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1703045989.375956/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/1dd5c85d64249bd8fe3cdb10baccbd0879d7301d95726abe31efe93d1978fa80/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/1dd5c85d64249bd8fe3cdb10baccbd0879d7301d95726abe31efe93d1978fa80/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.8 MB/s | 372 kB 00:00 fedora 28 MB/s | 73 MB 00:02 Last metadata expiration check: 0:00:01 ago on Wed Dec 20 04:19:58 2023. Package python3-dnf-4.18.2-1.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.4-1.fc40 fedora 317 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k python3-dateutil noarch 1:2.8.2-11.fc40 fedora 356 k python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd x86_64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.2 M Installed size: 3.6 M Downloading Packages: (1/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm 1.1 MB/s | 155 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm 1.1 MB/s | 157 kB 00:00 (3/7): python3-distro-1.8.0-6.fc39.noarch.rpm 1.8 MB/s | 49 kB 00:00 (4/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 1.9 MB/s | 356 kB 00:00 (5/7): python3-dnf-plugins-core-4.4.4-1.fc40.no 6.8 MB/s | 317 kB 00:00 (6/7): python3-six-1.16.0-12.fc39.noarch.rpm 1.6 MB/s | 41 kB 00:00 (7/7): python3-systemd-235-5.fc39.x86_64.rpm 3.2 MB/s | 107 kB 00:00 -------------------------------------------------------------------------------- Total 4.7 MB/s | 1.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.x86_64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 5/7 Installing : python3-dbus-1.3.2-4.fc39.x86_64 6/7 Installing : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.4-1.fc40.noarch 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 3.4 MB/s | 372 kB 00:00 fedora 23 MB/s | 73 MB 00:03 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.21-2.fc40 fedora 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.4-1.fc40 fedora 1.1 M cpio x86_64 2.14-5.fc40 fedora 280 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 40-0.20 fedora 20 k findutils x86_64 1:4.9.0-6.fc40 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38.9000-28.fc40 fedora 87 k grep x86_64 3.11-5.fc40 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.1-1.fc40 fedora 184 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 271-1.fc40 fedora 81 k rpm-build x86_64 4.19.1-2.fc40 fedora 80 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc40 fedora 1.3 M tar x86_64 2:1.35-2.fc40 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc40 fedora 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.5-1.fc40 fedora 557 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-5.fc40 fedora 117 k authselect x86_64 1.4.3-1.fc40 fedora 149 k authselect-libs x86_64 1.4.3-1.fc40 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.41-17.fc40 fedora 6.3 M binutils-gold x86_64 2.41-17.fc40 fedora 797 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 fedora 863 k coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc40 fedora 100 k curl x86_64 8.5.0-1.fc40 fedora 373 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc40 fedora 78 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.190-4.fc40 fedora 550 k elfutils-debuginfod-client x86_64 0.190-4.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.190-4.fc40 fedora 13 k elfutils-libelf x86_64 0.190-4.fc40 fedora 194 k elfutils-libs x86_64 0.190-4.fc40 fedora 259 k fedora-gpg-keys noarch 40-0.2 fedora 130 k fedora-release noarch 40-0.20 fedora 9.3 k fedora-release-identity-basic noarch 40-0.20 fedora 10 k fedora-repos noarch 40-0.2 fedora 9.3 k fedora-repos-rawhide noarch 40-0.2 fedora 8.9 k file x86_64 5.45-1.fc40 fedora 49 k file-libs x86_64 5.45-1.fc40 fedora 763 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.2.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 14.1-1.fc40 fedora 4.3 M gdbm x86_64 1:1.23-4.fc39 fedora 155 k gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 8.1 k glibc x86_64 2.38.9000-28.fc40 fedora 2.2 M glibc-common x86_64 2.38.9000-28.fc40 fedora 369 k glibc-gconv-extra x86_64 2.38.9000-28.fc40 fedora 1.7 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.3.1-1.fc40 fedora 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc40 fedora 31 k krb5-libs x86_64 1.21.2-2.fc40 fedora 765 k libacl x86_64 2.3.1-11.fc40 fedora 24 k libarchive x86_64 3.7.2-1.fc40 fedora 408 k libattr x86_64 2.5.1-9.fc40 fedora 18 k libblkid x86_64 2.39.2-1.fc40 fedora 116 k libbrotli x86_64 1.1.0-1.fc40 fedora 336 k libcap x86_64 2.69-1.fc40 fedora 83 k libcap-ng x86_64 0.8.3-8.fc40 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.5.0-1.fc40 fedora 345 k libeconf x86_64 0.5.2-1.fc40 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc40 fedora 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-6.fc40 fedora 112 k libgomp x86_64 13.2.1-6.fc40 fedora 321 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc40 fedora 154 k libnghttp2 x86_64 1.58.0-1.fc40 fedora 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.6-1.fc40 fedora 88 k libsemanage x86_64 3.6-1.fc40 fedora 116 k libsepol x86_64 3.6-1.fc40 fedora 340 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc40 fedora 67 k libssh x86_64 0.10.5-2.fc39 fedora 211 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ x86_64 13.2.1-6.fc40 fedora 865 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-0.fc40 fedora 94 k libunistring x86_64 1.1-5.fc40 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc40 fedora 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.12.3-1.fc40 fedora 691 k libzstd x86_64 1.5.5-4.fc39 fedora 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.1-1.fc40 fedora 343 k ncurses-base noarch 6.4-8.20231001.fc40 fedora 88 k ncurses-libs x86_64 6.4-8.20231001.fc40 fedora 338 k ocaml-srpm-macros noarch 9-1.fc40 fedora 9.0 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.4-1.fc40 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc40 fedora 522 k p11-kit-trust x86_64 0.25.3-1.fc40 fedora 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-9.fc40 fedora 547 k pam-libs x86_64 1.5.3-9.fc40 fedora 57 k pcre2 x86_64 10.42-2.fc40 fedora 233 k pcre2-syntax noarch 10.42-2.fc40 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.11.0-1.fc40 fedora 15 k python-srpm-macros noarch 3.12-5.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.11-1.fc40 fedora 8.3 k qt6-srpm-macros noarch 6.6.1-1.fc40 fedora 8.6 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.19.1-2.fc40 fedora 539 k rpm-build-libs x86_64 4.19.1-2.fc40 fedora 96 k rpm-libs x86_64 4.19.1-2.fc40 fedora 312 k rpm-sequoia x86_64 1.5.0-2.fc40 fedora 879 k rust-srpm-macros noarch 25.2-2.fc40 fedora 13 k setup noarch 2.14.5-1.fc40 fedora 155 k sqlite-libs x86_64 3.44.2-1.fc40 fedora 693 k systemd-libs x86_64 255.1-1.fc40 fedora 703 k util-linux-core x86_64 2.39.2-1.fc40 fedora 493 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.5-1.fc40 fedora 108 k zip x86_64 3.0-39.fc40 fedora 266 k zlib x86_64 1.2.13-5.fc40 fedora 94 k zstd x86_64 1.5.5-4.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total download size: 52 M Installed size: 180 M Downloading Packages: (1/152): ansible-srpm-macros-1-11.fc39.noarch.r 332 kB/s | 21 kB 00:00 (2/152): alternatives-1.25-1.fc39.x86_64.rpm 479 kB/s | 39 kB 00:00 (3/152): audit-libs-3.1.2-5.fc40.x86_64.rpm 1.0 MB/s | 117 kB 00:00 (4/152): basesystem-11-18.fc39.noarch.rpm 337 kB/s | 7.2 kB 00:00 (5/152): authselect-1.4.3-1.fc40.x86_64.rpm 2.0 MB/s | 149 kB 00:00 (6/152): authselect-libs-1.4.3-1.fc40.x86_64.rp 3.4 MB/s | 249 kB 00:00 (7/152): binutils-gold-2.41-17.fc40.x86_64.rpm 6.8 MB/s | 797 kB 00:00 (8/152): bzip2-1.0.8-16.fc39.x86_64.rpm 2.7 MB/s | 52 kB 00:00 (9/152): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 2.0 MB/s | 41 kB 00:00 (10/152): ca-certificates-2023.2.62_v7.0.401-4. 8.2 MB/s | 863 kB 00:00 (11/152): bash-5.2.21-2.fc40.x86_64.rpm 4.9 MB/s | 1.8 MB 00:00 (12/152): coreutils-9.4-1.fc40.x86_64.rpm 9.1 MB/s | 1.1 MB 00:00 (13/152): cpio-2.14-5.fc40.x86_64.rpm 6.6 MB/s | 280 kB 00:00 (14/152): cracklib-2.9.11-2.fc39.x86_64.rpm 4.4 MB/s | 94 kB 00:00 (15/152): crypto-policies-20231204-1.git1e3a2e4 4.0 MB/s | 100 kB 00:00 (16/152): binutils-2.41-17.fc40.x86_64.rpm 12 MB/s | 6.3 MB 00:00 (17/152): curl-8.5.0-1.fc40.x86_64.rpm 6.6 MB/s | 373 kB 00:00 (18/152): debugedit-5.0-12.fc40.x86_64.rpm 3.9 MB/s | 78 kB 00:00 (19/152): diffutils-3.10-3.fc39.x86_64.rpm 11 MB/s | 398 kB 00:00 (20/152): cyrus-sasl-lib-2.1.28-11.fc39.x86_64. 11 MB/s | 793 kB 00:00 (21/152): dwz-0.15-3.fc39.x86_64.rpm 7.0 MB/s | 134 kB 00:00 (22/152): coreutils-common-9.4-1.fc40.x86_64.rp 8.4 MB/s | 2.1 MB 00:00 (23/152): ed-1.19-4.fc39.x86_64.rpm 4.2 MB/s | 79 kB 00:00 (24/152): efi-srpm-macros-5-9.fc39.noarch.rpm 1.2 MB/s | 22 kB 00:00 (25/152): elfutils-debuginfod-client-0.190-4.fc 2.0 MB/s | 38 kB 00:00 (26/152): elfutils-default-yama-scope-0.190-4.f 734 kB/s | 13 kB 00:00 (27/152): elfutils-libelf-0.190-4.fc40.x86_64.r 9.8 MB/s | 194 kB 00:00 (28/152): elfutils-libs-0.190-4.fc40.x86_64.rpm 13 MB/s | 259 kB 00:00 (29/152): elfutils-0.190-4.fc40.x86_64.rpm 10 MB/s | 550 kB 00:00 (30/152): fedora-gpg-keys-40-0.2.noarch.rpm 6.8 MB/s | 130 kB 00:00 (31/152): fedora-release-40-0.20.noarch.rpm 531 kB/s | 9.3 kB 00:00 (32/152): fedora-release-common-40-0.20.noarch. 1.1 MB/s | 20 kB 00:00 (33/152): fedora-release-identity-basic-40-0.20 573 kB/s | 10 kB 00:00 (34/152): 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(152/152): zstd-1.5.5-4.fc39.x86_64.rpm 20 MB/s | 482 kB 00:00 -------------------------------------------------------------------------------- Total 27 MB/s | 52 MB 00:01 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-6.fc40.x86_64 1/152 Running scriptlet: libgcc-13.2.1-6.fc40.x86_64 1/152 Installing : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/152 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/152 Installing : fedora-release-identity-basic-40-0.20.noarch 3/152 Installing : fedora-repos-rawhide-40-0.2.noarch 4/152 Installing : fedora-gpg-keys-40-0.2.noarch 5/152 Installing : fedora-repos-40-0.2.noarch 6/152 Installing : fedora-release-common-40-0.20.noarch 7/152 Installing : fedora-release-40-0.20.noarch 8/152 Installing : setup-2.14.5-1.fc40.noarch 9/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-1.fc40.noarch 9/152 Installing : filesystem-3.18-6.fc39.x86_64 10/152 Installing : basesystem-11-18.fc39.noarch 11/152 Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/152 Installing : qt6-srpm-macros-6.6.1-1.fc40.noarch 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ncurses-libs-6.4-8.20231001.fc40.x86_64 27/152 Installing : bash-5.2.21-2.fc40.x86_64 28/152 Running scriptlet: bash-5.2.21-2.fc40.x86_64 28/152 Installing : zlib-1.2.13-5.fc40.x86_64 29/152 Installing : xz-libs-5.4.5-1.fc40.x86_64 30/152 Installing : bzip2-libs-1.0.8-16.fc39.x86_64 31/152 Installing : readline-8.2-4.fc39.x86_64 32/152 Installing : libstdc++-13.2.1-6.fc40.x86_64 33/152 Installing : libuuid-2.39.2-1.fc40.x86_64 34/152 Installing : libzstd-1.5.5-4.fc39.x86_64 35/152 Installing : elfutils-libelf-0.190-4.fc40.x86_64 36/152 Installing : popt-1.19-3.fc39.x86_64 37/152 Installing : libblkid-2.39.2-1.fc40.x86_64 38/152 Installing : gmp-1:6.2.1-5.fc39.x86_64 39/152 Installing : libattr-2.5.1-9.fc40.x86_64 40/152 Installing : libacl-2.3.1-11.fc40.x86_64 41/152 Installing : libxcrypt-4.4.36-2.fc39.x86_64 42/152 Installing : gdbm-libs-1:1.23-4.fc39.x86_64 43/152 Installing : libeconf-0.5.2-1.fc40.x86_64 44/152 Installing : lz4-libs-1.9.4-4.fc39.x86_64 45/152 Installing : mpfr-4.2.1-1.fc40.x86_64 46/152 Installing : dwz-0.15-3.fc39.x86_64 47/152 Installing : unzip-6.0-62.fc39.x86_64 48/152 Installing : file-libs-5.45-1.fc40.x86_64 49/152 Installing : file-5.45-1.fc40.x86_64 50/152 Installing : alternatives-1.25-1.fc39.x86_64 51/152 Installing : jansson-2.13.1-7.fc39.x86_64 52/152 Installing : libcap-ng-0.8.3-8.fc40.x86_64 53/152 Installing : audit-libs-3.1.2-5.fc40.x86_64 54/152 Installing : pam-libs-1.5.3-9.fc40.x86_64 55/152 Installing : libcap-2.69-1.fc40.x86_64 56/152 Installing : systemd-libs-255.1-1.fc40.x86_64 57/152 Installing : libcom_err-1.47.0-2.fc39.x86_64 58/152 Installing : libsepol-3.6-1.fc40.x86_64 59/152 Installing : libsmartcols-2.39.2-1.fc40.x86_64 60/152 Installing : libtasn1-4.19.0-3.fc39.x86_64 61/152 Installing : libunistring-1.1-5.fc40.x86_64 62/152 Installing : libidn2-2.3.4-3.fc39.x86_64 63/152 Installing : lua-libs-5.4.6-3.fc39.x86_64 64/152 Installing : pcre2-10.42-2.fc40.x86_64 65/152 Installing : libselinux-3.6-1.fc40.x86_64 66/152 Installing : sed-4.8-14.fc39.x86_64 67/152 Installing : grep-3.11-5.fc40.x86_64 68/152 Installing : findutils-1:4.9.0-6.fc40.x86_64 69/152 Installing : xz-5.4.5-1.fc40.x86_64 70/152 Installing : libmount-2.39.2-1.fc40.x86_64 71/152 Installing : util-linux-core-2.39.2-1.fc40.x86_64 72/152 Installing : libsemanage-3.6-1.fc40.x86_64 73/152 Installing : shadow-utils-2:4.14.0-2.fc40.x86_64 74/152 Running scriptlet: libutempter-1.2.1-10.fc39.x86_64 75/152 Installing : libutempter-1.2.1-10.fc39.x86_64 75/152 Installing : tar-2:1.35-2.fc40.x86_64 76/152 Installing : libpsl-0.21.2-4.fc39.x86_64 77/152 Installing : zip-3.0-39.fc40.x86_64 78/152 Installing : zstd-1.5.5-4.fc39.x86_64 79/152 Installing : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 80/152 Installing : gdbm-1:1.23-4.fc39.x86_64 81/152 Installing : libfdisk-2.39.2-1.fc40.x86_64 82/152 Installing : bzip2-1.0.8-16.fc39.x86_64 83/152 Installing : libxml2-2.12.3-1.fc40.x86_64 84/152 Installing : sqlite-libs-3.44.2-1.fc40.x86_64 85/152 Installing : ed-1.19-4.fc39.x86_64 86/152 Installing : patch-2.7.6-22.fc39.x86_64 87/152 Installing : elfutils-default-yama-scope-0.190-4.fc40.noarch 88/152 Running scriptlet: elfutils-default-yama-scope-0.190-4.fc40.noarch 88/152 Installing : cpio-2.14-5.fc40.x86_64 89/152 Installing : diffutils-3.10-3.fc39.x86_64 90/152 Installing : keyutils-libs-1.6.3-1.fc40.x86_64 91/152 Installing : libbrotli-1.1.0-1.fc40.x86_64 92/152 Installing : libffi-3.4.4-4.fc39.x86_64 93/152 Installing : p11-kit-0.25.3-1.fc40.x86_64 94/152 Installing : p11-kit-trust-0.25.3-1.fc40.x86_64 95/152 Running scriptlet: p11-kit-trust-0.25.3-1.fc40.x86_64 95/152 Installing : libgomp-13.2.1-6.fc40.x86_64 96/152 Installing : libnghttp2-1.58.0-1.fc40.x86_64 97/152 Installing : libpkgconf-1.9.5-2.fc39.x86_64 98/152 Installing : pkgconf-1.9.5-2.fc39.x86_64 99/152 Installing : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 100/152 Installing : libsigsegv-2.14-5.fc39.x86_64 101/152 Installing : gawk-5.2.2-2.fc39.x86_64 102/152 Installing : libverto-0.3.2-6.fc39.x86_64 103/152 Installing : xxhash-libs-0.8.2-1.fc39.x86_64 104/152 Installing : libssh-config-0.10.5-2.fc39.noarch 105/152 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 106/152 Installing : gnat-srpm-macros-6-3.fc39.noarch 107/152 Installing : ghc-srpm-macros-1.6.1-3.fc40.noarch 108/152 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 109/152 Installing : coreutils-common-9.4-1.fc40.x86_64 110/152 Installing : openssl-libs-1:3.1.4-1.fc40.x86_64 111/152 Installing : coreutils-9.4-1.fc40.x86_64 112/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : krb5-libs-1.21.2-2.fc40.x86_64 114/152 Installing : libtirpc-1.3.4-0.fc40.x86_64 115/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : gzip-1.12-6.fc39.x86_64 117/152 Installing : cracklib-2.9.11-2.fc39.x86_64 118/152 Installing : libpwquality-1.4.5-6.fc39.x86_64 119/152 Installing : authselect-1.4.3-1.fc40.x86_64 120/152 Installing : libnsl2-2.0.0-6.fc39.x86_64 121/152 Installing : pam-1.5.3-9.fc40.x86_64 122/152 Installing : libssh-0.10.5-2.fc39.x86_64 123/152 Installing : libarchive-3.7.2-1.fc40.x86_64 124/152 Installing : libevent-2.1.12-9.fc39.x86_64 125/152 Installing : openldap-2.6.6-1.fc39.x86_64 126/152 Installing : libcurl-8.5.0-1.fc40.x86_64 127/152 Installing : elfutils-libs-0.190-4.fc40.x86_64 128/152 Installing : elfutils-debuginfod-client-0.190-4.fc40.x86_64 129/152 Installing : binutils-gold-2.41-17.fc40.x86_64 130/152 Running scriptlet: binutils-gold-2.41-17.fc40.x86_64 130/152 Installing : binutils-2.41-17.fc40.x86_64 131/152 Running scriptlet: binutils-2.41-17.fc40.x86_64 131/152 Installing : elfutils-0.190-4.fc40.x86_64 132/152 Installing : gdb-minimal-14.1-1.fc40.x86_64 133/152 Installing : debugedit-5.0-12.fc40.x86_64 134/152 Installing : curl-8.5.0-1.fc40.x86_64 135/152 Installing : rpm-sequoia-1.5.0-2.fc40.x86_64 136/152 Installing : rpm-libs-4.19.1-2.fc40.x86_64 137/152 Running scriptlet: rpm-4.19.1-2.fc40.x86_64 138/152 Installing : rpm-4.19.1-2.fc40.x86_64 138/152 Installing : efi-srpm-macros-5-9.fc39.noarch 139/152 Installing : lua-srpm-macros-1-9.fc39.noarch 140/152 Installing : rpm-build-libs-4.19.1-2.fc40.x86_64 141/152 Installing : ansible-srpm-macros-1-11.fc39.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152 Installing : forge-srpm-macros-0.2.0-1.fc40.noarch 144/152 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 145/152 Installing : python-srpm-macros-3.12-5.fc40.noarch 146/152 Installing : redhat-rpm-config-271-1.fc40.noarch 147/152 Installing : rpm-build-4.19.1-2.fc40.x86_64 148/152 Installing : pyproject-srpm-macros-1.11.0-1.fc40.noarch 149/152 Installing : util-linux-2.39.2-1.fc40.x86_64 150/152 Installing : which-2.21-40.fc39.x86_64 151/152 Installing : info-7.1-1.fc40.x86_64 152/152 Running scriptlet: filesystem-3.18-6.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 152/152 Running scriptlet: rpm-4.19.1-2.fc40.x86_64 152/152 Running scriptlet: info-7.1-1.fc40.x86_64 152/152 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-17.fc40.x86_64 binutils-gold-2.41-17.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.x86_64 elfutils-debuginfod-client-0.190-4.fc40.x86_64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.x86_64 elfutils-libs-0.190-4.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc40.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.1-1.fc40.x86_64 gdbm-1:1.23-4.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-28.fc40.x86_64 glibc-common-2.38.9000-28.fc40.x86_64 glibc-gconv-extra-2.38.9000-28.fc40.x86_64 glibc-minimal-langpack-2.38.9000-28.fc40.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-11.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.5.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-6.fc40.x86_64 libgomp-13.2.1-6.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-1.fc40.x86_64 libsemanage-3.6-1.fc40.x86_64 libsepol-3.6-1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-6.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.3-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.x86_64 pam-libs-1.5.3-9.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.1-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.1-2.fc40.x86_64 rpm-build-4.19.1-2.fc40.x86_64 rpm-build-libs-4.19.1-2.fc40.x86_64 rpm-libs-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.5-1.fc40.noarch shadow-utils-2:4.14.0-2.fc40.x86_64 sqlite-libs-3.44.2-1.fc40.x86_64 systemd-libs-255.1-1.fc40.x86_64 tar-2:1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-17.fc40.x86_64 binutils-gold-2.41-17.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.x86_64 elfutils-debuginfod-client-0.190-4.fc40.x86_64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.x86_64 elfutils-libs-0.190-4.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.1-1.fc40.x86_64 gdbm-1.23-4.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-28.fc40.x86_64 glibc-common-2.38.9000-28.fc40.x86_64 glibc-gconv-extra-2.38.9000-28.fc40.x86_64 glibc-minimal-langpack-2.38.9000-28.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-11.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.5.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-6.fc40.x86_64 libgomp-13.2.1-6.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-1.fc40.x86_64 libsemanage-3.6-1.fc40.x86_64 libsepol-3.6-1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-6.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.3-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.x86_64 pam-libs-1.5.3-9.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.1-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.1-2.fc40.x86_64 rpm-build-4.19.1-2.fc40.x86_64 rpm-build-libs-4.19.1-2.fc40.x86_64 rpm-libs-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.x86_64 sqlite-libs-3.44.2-1.fc40.x86_64 systemd-libs-255.1-1.fc40.x86_64 tar-1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1701820800 Wrote: /builddir/build/SRPMS/libsbml-5.20.2-2.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-yi2oh5tv/libsbml/libsbml.spec) Config(child) 1 minutes 12 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsbml-5.20.2-2.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1703045989.375956/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1703045989.375956/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Start: build phase for libsbml-5.20.2-2.fc40.src.rpm Start: build setup for libsbml-5.20.2-2.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1701820800 Wrote: /builddir/build/SRPMS/libsbml-5.20.2-2.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 15 kB/s | 1.5 kB 00:00 fedora 504 kB/s | 21 kB 00:00 Dependencies resolved. ============================================================================================== Package Arch Version Repo Size ============================================================================================== Installing: R-core-devel x86_64 4.3.2-2.fc40 fedora 94 k R-devel x86_64 4.3.2-2.fc40 fedora 10 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k check-devel x86_64 0.15.2-10.fc39 fedora 40 k cmake x86_64 3.27.7-1.fc40 fedora 8.0 M expat-devel x86_64 2.5.0-3.fc39 fedora 52 k hostname x86_64 3.23-10.fc40 fedora 28 k libxml2-devel x86_64 2.12.3-1.fc40 fedora 524 k minizip-ng-compat-devel x86_64 3.0.10-5.fc40 fedora 31 k perl-ExtUtils-Embed noarch 1.35-503.fc40 fedora 18 k perl-ExtUtils-MakeMaker noarch 2:7.70-501.fc39 fedora 292 k perl-Test noarch 1.31-503.fc40 fedora 29 k perl-Test-Simple noarch 3:1.302198-1.fc40 fedora 577 k perl-devel x86_64 4:5.38.2-503.fc40 fedora 757 k perl-generators noarch 1.16-3.fc39 fedora 16 k python3-devel x86_64 3.12.1-1.fc40 fedora 312 k ruby-devel x86_64 3.2.2-183.fc40 fedora 458 k swig x86_64 4.1.1-15.fc40 fedora 1.6 M texlive-collection-latexrecommended noarch 11:svn65512-69.fc39 fedora 12 k zlib-devel x86_64 1.2.13-5.fc40 fedora 45 k Installing dependencies: R-core x86_64 4.3.2-2.fc40 fedora 63 M R-java x86_64 4.3.2-2.fc40 fedora 11 k R-java-devel x86_64 4.3.2-2.fc40 fedora 10 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k adobe-mappings-cmap noarch 20230622-1.fc39 fedora 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-1.fc39 fedora 113 k adobe-mappings-pdf noarch 20190401-5.fc39 fedora 698 k alsa-lib x86_64 1.2.10-3.fc40 fedora 522 k annobin-docs noarch 12.34-1.fc40 fedora 91 k annobin-plugin-gcc x86_64 12.34-1.fc40 fedora 959 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k biber noarch 2.19-3.fc39 fedora 292 k brotli x86_64 1.1.0-1.fc40 fedora 20 k brotli-devel x86_64 1.1.0-1.fc40 fedora 34 k cairo x86_64 1.18.0-1.fc40 fedora 710 k check x86_64 0.15.2-10.fc39 fedora 86 k cmake-data noarch 3.27.7-1.fc40 fedora 2.2 M cmake-filesystem x86_64 3.27.7-1.fc40 fedora 19 k cmake-rpm-macros noarch 3.27.7-1.fc40 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.2.1-6.fc40 fedora 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc40 fedora 117 k cups-libs x86_64 1:2.4.7-5.fc40 fedora 268 k dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.1-14.fc40 fedora 7.4 k expat x86_64 2.5.0-3.fc39 fedora 110 k flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-devel x86_64 3.3.1-5.fc39 fedora 117 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-netlib64 x86_64 3.3.1-5.fc39 fedora 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-5.fc39 fedora 17 k fontconfig x86_64 2.14.2-5.fc40 fedora 297 k fontconfig-devel x86_64 2.14.2-5.fc40 fedora 165 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-6.fc40 fedora 34 M gcc-c++ x86_64 13.2.1-6.fc40 fedora 13 M gcc-gfortran x86_64 13.2.1-6.fc40 fedora 12 M gcc-plugin-annobin x86_64 13.2.1-6.fc40 fedora 50 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k ghostscript x86_64 10.02.1-4.fc40 fedora 37 k ghostscript-tools-fonts x86_64 10.02.1-4.fc40 fedora 12 k ghostscript-tools-printing x86_64 10.02.1-4.fc40 fedora 13 k glib2 x86_64 2.78.3-1.fc40 fedora 2.8 M glib2-devel x86_64 2.78.3-1.fc40 fedora 596 k glibc-devel x86_64 2.38.9000-28.fc40 fedora 102 k glibc-headers-x86 noarch 2.38.9000-28.fc40 fedora 587 k gnutls x86_64 3.8.2-2.fc40 fedora 1.1 M google-droid-sans-fonts noarch 20200215-17.fc40 fedora 2.7 M google-noto-fonts-common noarch 20230801-4.fc40 fedora 17 k google-noto-sans-vf-fonts noarch 20230801-4.fc40 fedora 583 k graphite2 x86_64 1.3.14-13.fc40 fedora 95 k graphite2-devel x86_64 1.3.14-13.fc40 fedora 21 k groff-base x86_64 1.23.0-3.fc40 fedora 1.1 M guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.3.0-2.fc40 fedora 995 k harfbuzz-devel x86_64 8.3.0-2.fc40 fedora 450 k harfbuzz-icu x86_64 8.3.0-2.fc40 fedora 16 k java-17-openjdk x86_64 1:17.0.9.0.9-2.fc40 fedora 407 k java-17-openjdk-devel x86_64 1:17.0.9.0.9-2.fc40 fedora 4.7 M java-17-openjdk-headless x86_64 1:17.0.9.0.9-2.fc40 fedora 44 M javapackages-filesystem noarch 6.2.0-5.fc40 fedora 13 k jbig2dec-libs x86_64 0.20-1.fc40 fedora 73 k jbigkit-libs x86_64 2.1-27.fc40 fedora 53 k jsoncpp x86_64 1.9.5-5.fc39 fedora 99 k kernel-headers x86_64 6.7.0-0.rc6.48.fc40 fedora 1.6 M lcms2 x86_64 2.15-2.fc39 fedora 177 k libICE x86_64 1.1.1-1.fc40 fedora 74 k libRmath x86_64 4.3.2-2.fc40 fedora 122 k libRmath-devel x86_64 4.3.2-2.fc40 fedora 16 k libSM x86_64 1.2.4-1.fc40 fedora 43 k libX11 x86_64 1.8.7-1.fc40 fedora 647 k libX11-common noarch 1.8.7-1.fc40 fedora 176 k libX11-devel x86_64 1.8.7-1.fc40 fedora 1.0 M libX11-xcb x86_64 1.8.7-1.fc40 fedora 12 k libXau x86_64 1.0.11-4.fc40 fedora 31 k libXau-devel x86_64 1.0.11-4.fc40 fedora 14 k libXaw x86_64 1.0.15-1.fc40 fedora 203 k libXcomposite x86_64 0.4.6-1.fc40 fedora 24 k libXext x86_64 1.3.5-4.fc40 fedora 39 k libXft x86_64 2.3.8-4.fc40 fedora 72 k libXft-devel x86_64 2.3.8-4.fc40 fedora 50 k libXi x86_64 1.8.1-3.fc40 fedora 40 k libXmu x86_64 1.1.4-4.fc40 fedora 76 k libXpm x86_64 3.5.17-1.fc40 fedora 65 k libXrender x86_64 0.9.11-4.fc40 fedora 27 k libXrender-devel x86_64 0.9.11-4.fc40 fedora 19 k libXt x86_64 1.3.0-1.fc40 fedora 179 k libXtst x86_64 1.2.4-4.fc40 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.2-1.fc40 fedora 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.7-1.fc40 fedora 32 k libgfortran x86_64 13.2.1-6.fc40 fedora 906 k libgs x86_64 10.02.1-4.fc40 fedora 3.4 M libicu x86_64 73.2-3.fc40 fedora 10 M libicu-devel x86_64 73.2-3.fc40 fedora 924 k libijs x86_64 0.35-19.fc39 fedora 29 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.2-1.fc40 fedora 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpaper x86_64 1:2.1.1-1.fc39 fedora 27 k libpng x86_64 2:1.6.40-1.fc40 fedora 119 k libpng-devel x86_64 2:1.6.40-1.fc40 fedora 291 k libquadmath x86_64 13.2.1-6.fc40 fedora 198 k libquadmath-devel x86_64 13.2.1-6.fc40 fedora 39 k libselinux-devel x86_64 3.6-1.fc40 fedora 151 k libsepol-devel x86_64 3.6-1.fc40 fedora 49 k libstdc++-devel x86_64 13.2.1-6.fc40 fedora 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.5.0-3.fc40 fedora 305 k libtirpc-devel x86_64 1.3.4-0.fc40 fedora 125 k libtool-ltdl x86_64 2.4.7-8.fc40 fedora 36 k libuv x86_64 1:1.47.0-3.fc40 fedora 250 k libwebp x86_64 1.3.2-2.fc40 fedora 284 k libxcb x86_64 1.16-2.fc40 fedora 238 k libxcb-devel x86_64 1.16-2.fc40 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxslt x86_64 1.1.39-1.fc40 fedora 187 k libyaml x86_64 0.2.5-12.fc39 fedora 59 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k mailcap noarch 2.1.54-2.fc39 fedora 34 k make x86_64 1:4.4.1-2.fc39 fedora 589 k minizip-ng-compat x86_64 3.0.10-5.fc40 fedora 64 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k ncurses x86_64 6.4-8.20231001.fc40 fedora 418 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-16.fc40 fedora 138 k nss x86_64 3.95.0-1.fc40 fedora 695 k nss-softokn x86_64 3.95.0-1.fc40 fedora 414 k nss-softokn-freebl x86_64 3.95.0-1.fc40 fedora 351 k nss-sysinit x86_64 3.95.0-1.fc40 fedora 18 k nss-util x86_64 3.95.0-1.fc40 fedora 87 k openblas x86_64 0.3.25-1.fc40 fedora 38 k openblas-openmp x86_64 0.3.25-1.fc40 fedora 5.0 M openblas-openmp64 x86_64 0.3.25-1.fc40 fedora 4.9 M openjpeg2 x86_64 2.5.0-5.fc40 fedora 178 k pango x86_64 1.51.0-1.fc40 fedora 343 k pcre2-devel x86_64 10.42-2.fc40 fedora 505 k pcre2-utf16 x86_64 10.42-2.fc40 fedora 213 k pcre2-utf32 x86_64 10.42-2.fc40 fedora 200 k perl-Authen-SASL noarch 2.1700-1.fc40 fedora 62 k perl-AutoLoader noarch 5.74-503.fc40 fedora 21 k perl-AutoSplit noarch 5.74-503.fc40 fedora 22 k perl-B x86_64 1.88-503.fc40 fedora 177 k perl-B-Hooks-EndOfScope noarch 0.26-7.fc39 fedora 43 k perl-Benchmark noarch 1.24-503.fc40 fedora 27 k perl-Business-ISBN noarch 3.008-2.fc39 fedora 32 k perl-Business-ISBN-Data noarch 20231215.001-1.fc40 fedora 40 k perl-Business-ISMN noarch 1.203-2.fc39 fedora 25 k perl-Business-ISSN noarch 1.005-8.fc39 fedora 18 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Accessor noarch 0.51-18.fc39 fedora 28 k perl-Class-Data-Inheritable noarch 0.09-6.fc39 fedora 13 k perl-Class-Inspector noarch 1.36-14.fc39 fedora 30 k perl-Class-Method-Modifiers noarch 2.15-2.fc39 fedora 50 k perl-Class-Singleton noarch 1.6-9.fc39 fedora 25 k perl-Class-Struct noarch 0.68-503.fc40 fedora 22 k perl-Clone x86_64 0.46-4.fc39 fedora 22 k perl-Compress-Raw-Bzip2 x86_64 2.206-1.fc39 fedora 35 k perl-Compress-Raw-Zlib x86_64 2.206-1.fc39 fedora 64 k perl-Convert-ASN1 noarch 0.34-1.fc40 fedora 59 k perl-Data-Compare noarch 1.29-2.fc39 fedora 34 k perl-Data-Dump noarch 1.25-8.fc39 fedora 32 k perl-Data-Dumper x86_64 2.188-501.fc39 fedora 56 k perl-Data-OptList noarch 0.114-2.fc39 fedora 27 k perl-Data-Uniqid noarch 0.12-31.fc39 fedora 12 k perl-Date-ISO8601 noarch 0.005-18.fc39 fedora 19 k perl-Date-Manip noarch 6.93-1.fc40 fedora 1.1 M perl-DateTime x86_64 2:1.65-1.fc40 fedora 134 k perl-DateTime-Calendar-Julian noarch 0.107-5.fc39 fedora 23 k perl-DateTime-Format-Builder noarch 0.8300-11.fc39 fedora 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11:svn34957.0-69.fc39 fedora 54 k texlive-enumitem noarch 11:svn51423-69.fc39 fedora 28 k texlive-epstopdf noarch 11:svn66461-77.fc39 fedora 30 k texlive-epstopdf-pkg noarch 11:svn53546-69.fc39 fedora 364 k texlive-eso-pic noarch 11:svn56658-69.fc39 fedora 19 k texlive-etex noarch 11:svn66203-69.fc39 fedora 28 k texlive-etex-pkg noarch 11:svn41784-69.fc39 fedora 17 k texlive-etexcmds noarch 11:svn53171-69.fc39 fedora 310 k texlive-etoolbox noarch 11:svn56554-69.fc39 fedora 26 k texlive-euenc noarch 11:svn19795.0.1h-69.fc39 fedora 22 k texlive-euler noarch 11:svn42428-69.fc39 fedora 17 k texlive-everysel noarch 11:svn57489-69.fc39 fedora 448 k texlive-everyshi noarch 11:svn57001-69.fc39 fedora 147 k texlive-extsizes noarch 11:svn17263.1.4a-69.fc39 fedora 27 k texlive-fancybox noarch 11:svn18304.1.4-69.fc39 fedora 23 k texlive-fancyhdr noarch 11:svn64977-69.fc39 fedora 20 k texlive-fancyref noarch 11:svn15878.0.9c-69.fc39 fedora 19 k texlive-fancyvrb noarch 11:svn65585-69.fc39 fedora 26 k texlive-filecontents noarch 11:svn52142-69.fc39 fedora 16 k texlive-filehook noarch 11:svn64822-69.fc39 fedora 23 k texlive-finstrut noarch 11:svn21719.0.5-69.fc39 fedora 20 k texlive-firstaid noarch 11:svn64892-69.fc39 fedora 275 k texlive-fix2col noarch 11:svn38770-69.fc39 fedora 16 k texlive-float noarch 11:svn15878.1.3d-69.fc39 fedora 17 k texlive-fontspec noarch 11:svn63386-69.fc39 fedora 45 k texlive-footmisc noarch 11:svn62524-69.fc39 fedora 25 k texlive-footnotehyper noarch 11:svn60374-69.fc39 fedora 20 k texlive-fp noarch 11:svn49719-69.fc39 fedora 36 k texlive-fpl noarch 11:svn54512-69.fc39 fedora 302 k texlive-geometry noarch 11:svn61719-69.fc39 fedora 23 k texlive-gettitlestring noarch 11:svn53170-69.fc39 fedora 327 k texlive-glyphlist noarch 11:svn54074-77.fc39 fedora 38 k texlive-graphics noarch 11:svn66204-69.fc39 fedora 40 k texlive-graphics-cfg noarch 11:svn41448-69.fc39 fedora 13 k texlive-graphics-def noarch 11:svn64487-69.fc39 fedora 28 k texlive-grfext noarch 11:svn53024-69.fc39 fedora 317 k texlive-grffile noarch 11:svn52756-69.fc39 fedora 360 k texlive-gsftopk x86_64 11:svn52851-77.fc39 fedora 35 k texlive-helvetic noarch 11:svn61719-69.fc39 fedora 655 k texlive-hobsub noarch 11:svn52810-69.fc39 fedora 77 k texlive-hologo noarch 11:svn61719-69.fc39 fedora 586 k texlive-hopatch noarch 11:svn65491-69.fc39 fedora 328 k texlive-hycolor noarch 11:svn53584-69.fc39 fedora 384 k texlive-hypdoc noarch 11:svn65678-69.fc39 fedora 335 k texlive-hyperref noarch 11:svn65758-69.fc39 fedora 119 k texlive-hyph-utf8 noarch 11:svn61719-69.fc39 fedora 29 k texlive-hyphen-base noarch 11:svn66413-69.fc39 fedora 34 k texlive-hyphenex noarch 11:svn57387-69.fc39 fedora 19 k texlive-ifmtarg noarch 11:svn47544-69.fc39 fedora 15 k texlive-ifplatform noarch 11:svn45533-69.fc39 fedora 16 k texlive-iftex noarch 11:svn61910-69.fc39 fedora 21 k texlive-index noarch 11:svn24099.4.1beta-69.fc39 fedora 23 k texlive-infwarerr noarch 11:svn53023-69.fc39 fedora 295 k texlive-intcalc noarch 11:svn53168-69.fc39 fedora 432 k texlive-jknapltx noarch 11:svn19440.0-69.fc39 fedora 27 k texlive-kastrup noarch 11:svn15878.0-69.fc39 fedora 13 k texlive-knuth-lib noarch 11:svn57963-69.fc39 fedora 52 k texlive-knuth-local noarch 11:svn57963-69.fc39 fedora 45 k texlive-koma-script noarch 11:svn64685-69.fc39 fedora 6.4 M texlive-kpathsea x86_64 11:svn66209-77.fc39 fedora 1.1 M texlive-kvdefinekeys noarch 11:svn53193-69.fc39 fedora 306 k texlive-kvoptions noarch 11:svn63622-69.fc39 fedora 494 k texlive-kvsetkeys noarch 11:svn64632-69.fc39 fedora 398 k texlive-l3backend noarch 11:svn65573-69.fc39 fedora 897 k texlive-l3experimental noarch 11:svn65621-69.fc39 fedora 43 k texlive-l3kernel noarch 11:svn66094-69.fc39 fedora 202 k texlive-l3packages noarch 11:svn65722-69.fc39 fedora 41 k texlive-latex noarch 11:svn65161-77.fc39 fedora 30 M texlive-latex-fonts noarch 11:svn28888.0-69.fc39 fedora 50 k texlive-latex-lab noarch 11:svn64892-69.fc39 fedora 1.8 M texlive-latexbug noarch 11:svn63596-69.fc39 fedora 238 k texlive-latexconfig noarch 11:svn53525-69.fc39 fedora 15 k texlive-letltxmacro noarch 11:svn53022-69.fc39 fedora 300 k texlive-lib x86_64 11:20230311-77.fc39 fedora 492 k texlive-lineno noarch 11:svn65586-69.fc39 fedora 76 k texlive-listings noarch 11:svn66222-69.fc39 fedora 167 k texlive-lm noarch 11:svn65956-69.fc39 fedora 12 M texlive-lm-math noarch 11:svn36915.1.959-69.fc39 fedora 447 k texlive-logreq noarch 11:svn53003-69.fc39 fedora 20 k texlive-ltabptch noarch 11:svn17533.1.74d-69.fc39 fedora 18 k texlive-ltxcmds noarch 11:svn56421-69.fc39 fedora 400 k texlive-ltxmisc noarch 11:svn21927.0-69.fc39 fedora 28 k texlive-lua-alt-getopt noarch 11:svn56414-69.fc39 fedora 13 k texlive-lua-uni-algos noarch 11:svn62204-69.fc39 fedora 97 k texlive-luabidi noarch 11:svn54512-69.fc39 fedora 20 k texlive-luahbtex x86_64 11:svn66186-77.fc39 fedora 2.0 M texlive-lualatex-math noarch 11:svn61464-69.fc39 fedora 20 k texlive-lualibs noarch 11:svn64615-69.fc39 fedora 160 k texlive-luaotfload noarch 11:svn64616-77.fc39 fedora 1.2 M texlive-luatex x86_64 11:svn66967-77.fc39 fedora 3.9 M texlive-luatexbase noarch 11:svn52663-69.fc39 fedora 16 k texlive-lwarp noarch 11:svn66259-77.fc39 fedora 3.5 M texlive-makecmds noarch 11:svn15878.0-69.fc39 fedora 15 k texlive-makeindex x86_64 11:svn62517-77.fc39 fedora 436 k texlive-marginnote noarch 11:svn48383-69.fc39 fedora 17 k texlive-marvosym noarch 11:svn29349.2.2a-69.fc39 fedora 146 k texlive-mathpazo noarch 11:svn52663-69.fc39 fedora 90 k texlive-mathspec noarch 11:svn42773-69.fc39 fedora 24 k texlive-mathtools noarch 11:svn63767-69.fc39 fedora 38 k texlive-mdwtools noarch 11:svn15878.1.05.4-69.fc39 fedora 36 k texlive-memoir noarch 11:svn65040-69.fc39 fedora 94 k texlive-metafont x86_64 11:svn66186-77.fc39 fedora 268 k texlive-metalogo noarch 11:svn18611.0.12-69.fc39 fedora 16 k texlive-mflogo noarch 11:svn42428-69.fc39 fedora 16 k texlive-mfnfss noarch 11:svn46036-69.fc39 fedora 17 k texlive-mfware x86_64 11:svn66186-77.fc39 fedora 101 k texlive-microtype noarch 11:svn66587-69.fc39 fedora 83 k texlive-minitoc noarch 11:svn61719-69.fc39 fedora 122 k texlive-mnsymbol noarch 11:svn18651.1.4-69.fc39 fedora 4.4 M texlive-modes noarch 11:svn61719-69.fc39 fedora 306 k texlive-mparhack noarch 11:svn59066-69.fc39 fedora 18 k texlive-mptopdf noarch 11:svn65952-77.fc39 fedora 52 k texlive-ms noarch 11:svn57473-69.fc39 fedora 17 k texlive-multido noarch 11:svn18302.1.42-69.fc39 fedora 18 k texlive-natbib noarch 11:svn20668.8.31b-69.fc39 fedora 31 k texlive-newfloat noarch 11:svn52906-69.fc39 fedora 120 k texlive-notoccite noarch 11:svn18129.0-69.fc39 fedora 13 k texlive-ntgclass noarch 11:svn65522-69.fc39 fedora 34 k texlive-oberdiek noarch 11:svn65521-77.fc39 fedora 7.7 M texlive-pagesel noarch 11:svn56105-69.fc39 fedora 340 k texlive-palatino noarch 11:svn61719-69.fc39 fedora 423 k texlive-paralist noarch 11:svn43021-69.fc39 fedora 18 k texlive-parallel noarch 11:svn15878.0-69.fc39 fedora 18 k texlive-parskip noarch 11:svn58358-69.fc39 fedora 17 k texlive-pdfcol noarch 11:svn64469-69.fc39 fedora 327 k texlive-pdfcolfoot noarch 11:svn65512-69.fc39 fedora 319 k texlive-pdfcolmk noarch 11:svn52912-69.fc39 fedora 18 k texlive-pdfescape noarch 11:svn53082-69.fc39 fedora 353 k texlive-pdflscape noarch 11:svn64851-69.fc39 fedora 324 k texlive-pdfmanagement-testphase noarch 11:svn66532-69.fc39 fedora 8.3 M texlive-pdfpages noarch 11:svn65319-69.fc39 fedora 32 k texlive-pdftex x86_64 11:svn66243-77.fc39 fedora 2.5 M texlive-pdftexcmds noarch 11:svn55777-69.fc39 fedora 391 k texlive-pgf noarch 11:svn65553-69.fc39 fedora 897 k texlive-picture noarch 11:svn54867-69.fc39 fedora 312 k texlive-placeins noarch 11:svn19848.2.2-69.fc39 fedora 13 k texlive-plain noarch 11:svn57963-69.fc39 fedora 48 k texlive-polyglossia noarch 11:svn65792-69.fc39 fedora 220 k texlive-psfrag noarch 11:svn15878.3.04-69.fc39 fedora 15 k texlive-pslatex noarch 11:svn57434-69.fc39 fedora 22 k texlive-psnfss noarch 11:svn54694-69.fc39 fedora 60 k texlive-pspicture noarch 11:svn15878.0-69.fc39 fedora 16 k texlive-pst-3d noarch 11:svn17257.1.10-69.fc39 fedora 18 k texlive-pst-coil noarch 11:svn62977-69.fc39 fedora 18 k texlive-pst-eps noarch 11:svn15878.1.0-69.fc39 fedora 17 k texlive-pst-fill noarch 11:svn60671-69.fc39 fedora 18 k texlive-pst-grad noarch 11:svn15878.1.06-69.fc39 fedora 18 k texlive-pst-math noarch 11:svn64732-69.fc39 fedora 20 k texlive-pst-node noarch 11:svn61838-69.fc39 fedora 40 k texlive-pst-ovl noarch 11:svn54963-69.fc39 fedora 16 k texlive-pst-plot noarch 11:svn65346-69.fc39 fedora 37 k texlive-pst-text noarch 11:svn49542-69.fc39 fedora 19 k texlive-pst-tools noarch 11:svn60621-69.fc39 fedora 21 k texlive-pst-tree noarch 11:svn60421-69.fc39 fedora 21 k texlive-pstricks noarch 11:svn65346-69.fc39 fedora 117 k texlive-pstricks-add noarch 11:svn65067-69.fc39 fedora 37 k texlive-ragged2e noarch 11:svn66152-69.fc39 fedora 682 k texlive-rcs noarch 11:svn15878.0-69.fc39 fedora 28 k texlive-realscripts noarch 11:svn56594-69.fc39 fedora 19 k texlive-refcount noarch 11:svn53164-69.fc39 fedora 335 k texlive-rerunfilecheck noarch 11:svn63869-69.fc39 fedora 341 k texlive-rsfs noarch 11:svn15878.0-69.fc39 fedora 73 k texlive-sansmath noarch 11:svn17997.1.1-69.fc39 fedora 14 k texlive-sansmathaccent noarch 11:svn53628-69.fc39 fedora 36 k texlive-sauerj noarch 11:svn15878.0-69.fc39 fedora 20 k texlive-section noarch 11:svn20180.0-69.fc39 fedora 24 k texlive-seminar noarch 11:svn59801-69.fc39 fedora 52 k texlive-sepnum noarch 11:svn20186.2.0-69.fc39 fedora 17 k texlive-setspace noarch 11:svn65206-69.fc39 fedora 18 k texlive-showexpl noarch 11:svn57414-69.fc39 fedora 18 k texlive-stringenc noarch 11:svn52982-69.fc39 fedora 702 k texlive-subfig noarch 11:svn15878.1.3-69.fc39 fedora 21 k texlive-symbol noarch 11:svn61719-69.fc39 fedora 54 k texlive-tex x86_64 11:svn66186-77.fc39 fedora 212 k texlive-tex-ini-files noarch 11:svn40533-69.fc39 fedora 15 k texlive-texlive-common-doc noarch 11:svn54176-69.fc39 fedora 158 k texlive-texlive-en noarch 11:svn66572-77.fc39 fedora 2.0 M texlive-texlive-msg-translations noarch 11:svn66593-69.fc39 fedora 165 k texlive-texlive-scripts noarch 11:svn66584-77.fc39 fedora 122 k texlive-texlive.infra noarch 11:svn66512-77.fc39 fedora 295 k texlive-textcase noarch 11:svn63868-69.fc39 fedora 16 k texlive-thumbpdf noarch 11:svn62518-77.fc39 fedora 41 k texlive-times noarch 11:svn61719-69.fc39 fedora 368 k texlive-tipa noarch 11:svn29349.1.3-69.fc39 fedora 2.8 M texlive-titlesec noarch 11:svn59845-69.fc39 fedora 34 k texlive-tools noarch 11:svn64892-69.fc39 fedora 75 k texlive-translator noarch 11:svn59412-69.fc39 fedora 296 k texlive-transparent noarch 11:svn64852-69.fc39 fedora 286 k texlive-typehtml noarch 11:svn17134.0-69.fc39 fedora 21 k texlive-ucharcat noarch 11:svn38907-69.fc39 fedora 15 k texlive-ucs noarch 11:svn64114-69.fc39 fedora 423 k texlive-underscore noarch 11:svn18261.0-69.fc39 fedora 19 k texlive-unicode-data noarch 11:svn64423-69.fc39 fedora 371 k texlive-unicode-math noarch 11:svn61719-69.fc39 fedora 63 k texlive-uniquecounter noarch 11:svn53162-69.fc39 fedora 300 k texlive-url noarch 11:svn32528.3.4-69.fc39 fedora 20 k texlive-utopia noarch 11:svn15878.0-69.fc39 fedora 239 k texlive-varwidth noarch 11:svn24104.0.92-69.fc39 fedora 18 k texlive-xcolor noarch 11:svn63563-69.fc39 fedora 32 k texlive-xdvi x86_64 11:svn62387-77.fc39 fedora 351 k texlive-xetex x86_64 11:svn66203-77.fc39 fedora 1.3 M texlive-xetexconfig noarch 11:svn45845-69.fc39 fedora 11 k texlive-xifthen noarch 11:svn38929-69.fc39 fedora 16 k texlive-xkeyval noarch 11:svn63616-69.fc39 fedora 27 k texlive-xltxtra noarch 11:svn56594-69.fc39 fedora 17 k texlive-xpatch noarch 11:svn54563-69.fc39 fedora 19 k texlive-xstring noarch 11:svn65551-69.fc39 fedora 25 k texlive-xunicode noarch 11:svn30466.0.981-69.fc39 fedora 44 k texlive-zapfding noarch 11:svn61719-69.fc39 fedora 64 k texlive-zref noarch 11:svn62977-69.fc39 fedora 688 k tk x86_64 1:8.6.13-2.fc40 fedora 1.6 M tk-devel x86_64 1:8.6.13-2.fc40 fedora 541 k tre x86_64 0.8.0-42.20140228gitc2f5d13.fc40 fedora 43 k tre-common noarch 0.8.0-42.20140228gitc2f5d13.fc40 fedora 31 k tre-devel x86_64 0.8.0-42.20140228gitc2f5d13.fc40 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2023c-5.fc40 fedora 717 k tzdata-java noarch 2023c-5.fc40 fedora 46 k urw-base35-bookman-fonts noarch 20200910-18.fc39 fedora 847 k urw-base35-c059-fonts noarch 20200910-18.fc39 fedora 874 k urw-base35-d050000l-fonts noarch 20200910-18.fc39 fedora 76 k urw-base35-fonts noarch 20200910-18.fc39 fedora 10 k urw-base35-fonts-common noarch 20200910-18.fc39 fedora 21 k urw-base35-gothic-fonts noarch 20200910-18.fc39 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-18.fc39 fedora 795 k urw-base35-nimbus-roman-fonts noarch 20200910-18.fc39 fedora 856 k urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-18.fc39 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 fedora 42 k urw-base35-z003-fonts noarch 20200910-18.fc39 fedora 276 k vim-filesystem noarch 2:9.0.2167-1.fc40 fedora 18 k xdg-utils noarch 1.2.0~git20231511.21fb316-1.fc40 fedora 81 k xml-common noarch 0.6.3-62.fc40 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-37.fc40 fedora 504 k xorg-x11-proto-devel noarch 2023.2-3.fc40 fedora 298 k xpdf-libs x86_64 1:4.04-10.fc39 fedora 647 k xz-devel x86_64 5.4.5-1.fc40 fedora 67 k zziplib x86_64 0.13.72-5.fc39 fedora 86 k Transaction Summary ============================================================================================== Install 735 Packages Total download size: 528 M Installed size: 1.4 G Downloading Packages: (1/735): R-devel-4.3.2-2.fc40.x86_64.rpm 83 kB/s | 10 kB 00:00 (2/735): R-java-4.3.2-2.fc40.x86_64.rpm 234 kB/s | 11 kB 00:00 (3/735): R-java-devel-4.3.2-2.fc40.x86_64.rpm 251 kB/s | 10 kB 00:00 (4/735): R-core-devel-4.3.2-2.fc40.x86_64.rpm 441 kB/s | 94 kB 00:00 (5/735): R-rpm-macros-1.2.1-7.fc39.noarch.rpm 153 kB/s | 11 kB 00:00 (6/735): abattis-cantarell-vf-fonts-0.301-10.fc 1.2 MB/s | 121 kB 00:00 (7/735): adobe-mappings-cmap-deprecated-2023062 918 kB/s | 113 kB 00:00 (8/735): adobe-mappings-pdf-20190401-5.fc39.noa 1.3 MB/s | 698 kB 00:00 (9/735): adobe-mappings-cmap-20230622-1.fc39.no 2.0 MB/s | 2.1 MB 00:01 (10/735): alsa-lib-1.2.10-3.fc40.x86_64.rpm 1.2 MB/s | 522 kB 00:00 (11/735): annobin-docs-12.34-1.fc40.noarch.rpm 2.8 MB/s | 91 kB 00:00 (12/735): avahi-libs-0.8-24.fc39.x86_64.rpm 2.4 MB/s | 67 kB 00:00 (13/735): biber-2.19-3.fc39.noarch.rpm 4.1 MB/s | 292 kB 00:00 (14/735): brotli-1.1.0-1.fc40.x86_64.rpm 901 kB/s | 20 kB 00:00 (15/735): brotli-devel-1.1.0-1.fc40.x86_64.rpm 1.5 MB/s | 34 kB 00:00 (16/735): bzip2-devel-1.0.8-16.fc39.x86_64.rpm 4.9 MB/s | 214 kB 00:00 (17/735): cairo-1.18.0-1.fc40.x86_64.rpm 8.1 MB/s | 710 kB 00:00 (18/735): check-0.15.2-10.fc39.x86_64.rpm 1.9 MB/s | 86 kB 00:00 (19/735): check-devel-0.15.2-10.fc39.x86_64.rpm 1.5 MB/s | 40 kB 00:00 (20/735): annobin-plugin-gcc-12.34-1.fc40.x86_6 1.3 MB/s | 959 kB 00:00 (21/735): cmake-3.27.7-1.fc40.x86_64.rpm 13 MB/s | 8.0 MB 00:00 (22/735): cmake-filesystem-3.27.7-1.fc40.x86_64 958 kB/s | 19 kB 00:00 (23/735): cmake-rpm-macros-3.27.7-1.fc40.noarch 686 kB/s | 19 kB 00:00 (24/735): copy-jdk-configs-4.1-3.fc39.noarch.rp 1.4 MB/s | 28 kB 00:00 (25/735): cmake-data-3.27.7-1.fc40.noarch.rpm 2.5 MB/s | 2.2 MB 00:00 (26/735): R-core-4.3.2-2.fc40.x86_64.rpm 21 MB/s | 63 MB 00:03 (27/735): cpp-13.2.1-6.fc40.x86_64.rpm 17 MB/s | 11 MB 00:00 (28/735): crypto-policies-scripts-20231204-1.gi 1.6 MB/s | 117 kB 00:00 (29/735): cups-libs-2.4.7-5.fc40.x86_64.rpm 8.4 MB/s | 268 kB 00:00 (30/735): default-fonts-core-sans-4.0-9.fc40.no 1.1 MB/s | 32 kB 00:00 (31/735): emacs-filesystem-29.1-14.fc40.noarch. 252 kB/s | 7.4 kB 00:00 (32/735): dbus-libs-1.14.10-1.fc40.x86_64.rpm 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texlive-jknapltx-11:svn19440.0-69.fc39.noarch 675/735 Installing : texlive-minitoc-11:svn61719-69.fc39.noarch 676/735 Installing : texlive-ltxmisc-11:svn21927.0-69.fc39.noarch 677/735 Installing : texlive-mnsymbol-11:svn18651.1.4-69.fc39.noarch 678/735 Installing : texlive-mathspec-11:svn42773-69.fc39.noarch 679/735 Installing : texlive-typehtml-11:svn17134.0-69.fc39.noarch 680/735 Installing : texlive-ucs-11:svn64114-69.fc39.noarch 681/735 Installing : texlive-beamer-11:svn65984-69.fc39.noarch 682/735 Installing : texlive-breqn-11:svn60881-69.fc39.noarch 683/735 Installing : texlive-l3experimental-11:svn65621-69.fc39.noarc 684/735 Installing : texlive-realscripts-11:svn56594-69.fc39.noarch 685/735 Installing : texlive-xltxtra-11:svn56594-69.fc39.noarch 686/735 Installing : cmake-data-3.27.7-1.fc40.noarch 687/735 Installing : cmake-3.27.7-1.fc40.x86_64 688/735 Installing : fribidi-1.0.13-2.fc39.x86_64 689/735 Installing : pango-1.51.0-1.fc40.x86_64 690/735 Installing : 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hostname-3.23-10.fc40.x86_64 735/735 Running scriptlet: texlive-base-11:20230311-77.fc39.x86_64 735/735 Running scriptlet: urw-base35-bookman-fonts-20200910-18.fc39.noarch 735/735 Running scriptlet: urw-base35-c059-fonts-20200910-18.fc39.noarch 735/735 Running scriptlet: urw-base35-d050000l-fonts-20200910-18.fc39.noarc 735/735 Running scriptlet: urw-base35-gothic-fonts-20200910-18.fc39.noarch 735/735 Running scriptlet: urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39 735/735 Running scriptlet: urw-base35-nimbus-roman-fonts-20200910-18.fc39.n 735/735 Running scriptlet: urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 735/735 Running scriptlet: urw-base35-p052-fonts-20200910-18.fc39.noarch 735/735 Running scriptlet: urw-base35-standard-symbols-ps-fonts-20200910-18 735/735 Running scriptlet: urw-base35-z003-fonts-20200910-18.fc39.noarch 735/735 Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 735/735 Running scriptlet: crypto-policies-scripts-20231204-1.git1e3a2e4.fc 735/735 Running scriptlet: nss-3.95.0-1.fc40.x86_64 735/735 Running scriptlet: fontconfig-2.14.2-5.fc40.x86_64 735/735 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-2.fc40.x86 735/735 Running scriptlet: java-17-openjdk-1:17.0.9.0.9-2.fc40.x86_64 735/735 Running scriptlet: java-17-openjdk-devel-1:17.0.9.0.9-2.fc40.x86_64 735/735 Running scriptlet: hostname-3.23-10.fc40.x86_64 735/735 Installed: R-core-4.3.2-2.fc40.x86_64 R-core-devel-4.3.2-2.fc40.x86_64 R-devel-4.3.2-2.fc40.x86_64 R-java-4.3.2-2.fc40.x86_64 R-java-devel-4.3.2-2.fc40.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch adobe-mappings-cmap-20230622-1.fc39.noarch adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch adobe-mappings-pdf-20190401-5.fc39.noarch alsa-lib-1.2.10-3.fc40.x86_64 annobin-docs-12.34-1.fc40.noarch annobin-plugin-gcc-12.34-1.fc40.x86_64 avahi-libs-0.8-24.fc39.x86_64 biber-2.19-3.fc39.noarch brotli-1.1.0-1.fc40.x86_64 brotli-devel-1.1.0-1.fc40.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc40.x86_64 check-0.15.2-10.fc39.x86_64 check-devel-0.15.2-10.fc39.x86_64 cmake-3.27.7-1.fc40.x86_64 cmake-data-3.27.7-1.fc40.noarch cmake-filesystem-3.27.7-1.fc40.x86_64 cmake-rpm-macros-3.27.7-1.fc40.noarch copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-6.fc40.x86_64 crypto-policies-scripts-20231204-1.git1e3a2e4.fc40.noarch cups-libs-1:2.4.7-5.fc40.x86_64 dbus-libs-1:1.14.10-1.fc40.x86_64 default-fonts-core-sans-4.0-9.fc40.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.1-14.fc40.noarch expat-2.5.0-3.fc39.x86_64 expat-devel-2.5.0-3.fc39.x86_64 flexiblas-3.3.1-5.fc39.x86_64 flexiblas-devel-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-netlib64-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 fontconfig-2.14.2-5.fc40.x86_64 fontconfig-devel-2.14.2-5.fc40.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-6.fc40.x86_64 gcc-c++-13.2.1-6.fc40.x86_64 gcc-gfortran-13.2.1-6.fc40.x86_64 gcc-plugin-annobin-13.2.1-6.fc40.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 ghostscript-10.02.1-4.fc40.x86_64 ghostscript-tools-fonts-10.02.1-4.fc40.x86_64 ghostscript-tools-printing-10.02.1-4.fc40.x86_64 glib2-2.78.3-1.fc40.x86_64 glib2-devel-2.78.3-1.fc40.x86_64 glibc-devel-2.38.9000-28.fc40.x86_64 glibc-headers-x86-2.38.9000-28.fc40.noarch gnutls-3.8.2-2.fc40.x86_64 google-droid-sans-fonts-20200215-17.fc40.noarch google-noto-fonts-common-20230801-4.fc40.noarch google-noto-sans-vf-fonts-20230801-4.fc40.noarch graphite2-1.3.14-13.fc40.x86_64 graphite2-devel-1.3.14-13.fc40.x86_64 groff-base-1.23.0-3.fc40.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.3.0-2.fc40.x86_64 harfbuzz-devel-8.3.0-2.fc40.x86_64 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texlive-breakurl-11:svn29901.1.40-69.fc39.noarch texlive-breqn-11:svn60881-69.fc39.noarch texlive-caption-11:svn66580-69.fc39.noarch texlive-carlisle-11:svn59577-69.fc39.noarch texlive-catchfile-11:svn53084-69.fc39.noarch texlive-changepage-11:svn15878.1.0c-69.fc39.noarch texlive-charter-11:svn15878.0-69.fc39.noarch texlive-cite-11:svn36428.5.5-69.fc39.noarch texlive-cm-11:svn57963-69.fc39.noarch texlive-cm-super-11:svn15878.0-69.fc39.noarch texlive-cmap-11:svn57640-69.fc39.noarch texlive-collection-basic-11:svn59159-69.fc39.noarch texlive-collection-latex-11:svn63515-69.fc39.noarch texlive-collection-latexrecommended-11:svn65512-69.fc39.noarch texlive-colorprofiles-11:svn49086-69.fc39.noarch texlive-colortbl-11:svn64015-69.fc39.noarch texlive-courier-11:svn61719-69.fc39.noarch texlive-crop-11:svn55424-69.fc39.noarch texlive-csquotes-11:svn64389-69.fc39.noarch texlive-ctable-11:svn38672-69.fc39.noarch texlive-ctablestack-11:svn38514-69.fc39.noarch texlive-currfile-11:svn64673-69.fc39.noarch texlive-dehyph-11:svn48599-69.fc39.noarch texlive-dvipdfmx-11:svn66203-77.fc39.x86_64 texlive-dvips-11:svn66203-77.fc39.x86_64 texlive-ec-11:svn25033.1.0-69.fc39.noarch texlive-enctex-11:svn34957.0-69.fc39.noarch texlive-enumitem-11:svn51423-69.fc39.noarch texlive-epstopdf-11:svn66461-77.fc39.noarch texlive-epstopdf-pkg-11:svn53546-69.fc39.noarch texlive-eso-pic-11:svn56658-69.fc39.noarch texlive-etex-11:svn66203-69.fc39.noarch texlive-etex-pkg-11:svn41784-69.fc39.noarch texlive-etexcmds-11:svn53171-69.fc39.noarch texlive-etoolbox-11:svn56554-69.fc39.noarch texlive-euenc-11:svn19795.0.1h-69.fc39.noarch texlive-euler-11:svn42428-69.fc39.noarch texlive-everysel-11:svn57489-69.fc39.noarch texlive-everyshi-11:svn57001-69.fc39.noarch texlive-extsizes-11:svn17263.1.4a-69.fc39.noarch texlive-fancybox-11:svn18304.1.4-69.fc39.noarch texlive-fancyhdr-11:svn64977-69.fc39.noarch texlive-fancyref-11:svn15878.0.9c-69.fc39.noarch texlive-fancyvrb-11:svn65585-69.fc39.noarch texlive-filecontents-11:svn52142-69.fc39.noarch texlive-filehook-11:svn64822-69.fc39.noarch texlive-finstrut-11:svn21719.0.5-69.fc39.noarch texlive-firstaid-11:svn64892-69.fc39.noarch texlive-fix2col-11:svn38770-69.fc39.noarch texlive-float-11:svn15878.1.3d-69.fc39.noarch texlive-fontspec-11:svn63386-69.fc39.noarch texlive-footmisc-11:svn62524-69.fc39.noarch texlive-footnotehyper-11:svn60374-69.fc39.noarch texlive-fp-11:svn49719-69.fc39.noarch texlive-fpl-11:svn54512-69.fc39.noarch texlive-geometry-11:svn61719-69.fc39.noarch texlive-gettitlestring-11:svn53170-69.fc39.noarch texlive-glyphlist-11:svn54074-77.fc39.noarch texlive-graphics-11:svn66204-69.fc39.noarch texlive-graphics-cfg-11:svn41448-69.fc39.noarch texlive-graphics-def-11:svn64487-69.fc39.noarch texlive-grfext-11:svn53024-69.fc39.noarch texlive-grffile-11:svn52756-69.fc39.noarch texlive-gsftopk-11:svn52851-77.fc39.x86_64 texlive-helvetic-11:svn61719-69.fc39.noarch texlive-hobsub-11:svn52810-69.fc39.noarch texlive-hologo-11:svn61719-69.fc39.noarch texlive-hopatch-11:svn65491-69.fc39.noarch texlive-hycolor-11:svn53584-69.fc39.noarch texlive-hypdoc-11:svn65678-69.fc39.noarch texlive-hyperref-11:svn65758-69.fc39.noarch texlive-hyph-utf8-11:svn61719-69.fc39.noarch texlive-hyphen-base-11:svn66413-69.fc39.noarch texlive-hyphenex-11:svn57387-69.fc39.noarch texlive-ifmtarg-11:svn47544-69.fc39.noarch texlive-ifplatform-11:svn45533-69.fc39.noarch texlive-iftex-11:svn61910-69.fc39.noarch texlive-index-11:svn24099.4.1beta-69.fc39.noarch texlive-infwarerr-11:svn53023-69.fc39.noarch texlive-intcalc-11:svn53168-69.fc39.noarch texlive-jknapltx-11:svn19440.0-69.fc39.noarch texlive-kastrup-11:svn15878.0-69.fc39.noarch texlive-knuth-lib-11:svn57963-69.fc39.noarch texlive-knuth-local-11:svn57963-69.fc39.noarch texlive-koma-script-11:svn64685-69.fc39.noarch texlive-kpathsea-11:svn66209-77.fc39.x86_64 texlive-kvdefinekeys-11:svn53193-69.fc39.noarch texlive-kvoptions-11:svn63622-69.fc39.noarch texlive-kvsetkeys-11:svn64632-69.fc39.noarch texlive-l3backend-11:svn65573-69.fc39.noarch texlive-l3experimental-11:svn65621-69.fc39.noarch texlive-l3kernel-11:svn66094-69.fc39.noarch texlive-l3packages-11:svn65722-69.fc39.noarch texlive-latex-11:svn65161-77.fc39.noarch texlive-latex-fonts-11:svn28888.0-69.fc39.noarch texlive-latex-lab-11:svn64892-69.fc39.noarch texlive-latexbug-11:svn63596-69.fc39.noarch texlive-latexconfig-11:svn53525-69.fc39.noarch texlive-letltxmacro-11:svn53022-69.fc39.noarch texlive-lib-11:20230311-77.fc39.x86_64 texlive-lineno-11:svn65586-69.fc39.noarch texlive-listings-11:svn66222-69.fc39.noarch texlive-lm-11:svn65956-69.fc39.noarch texlive-lm-math-11:svn36915.1.959-69.fc39.noarch texlive-logreq-11:svn53003-69.fc39.noarch texlive-ltabptch-11:svn17533.1.74d-69.fc39.noarch texlive-ltxcmds-11:svn56421-69.fc39.noarch texlive-ltxmisc-11:svn21927.0-69.fc39.noarch texlive-lua-alt-getopt-11:svn56414-69.fc39.noarch texlive-lua-uni-algos-11:svn62204-69.fc39.noarch texlive-luabidi-11:svn54512-69.fc39.noarch texlive-luahbtex-11:svn66186-77.fc39.x86_64 texlive-lualatex-math-11:svn61464-69.fc39.noarch texlive-lualibs-11:svn64615-69.fc39.noarch texlive-luaotfload-11:svn64616-77.fc39.noarch texlive-luatex-11:svn66967-77.fc39.x86_64 texlive-luatexbase-11:svn52663-69.fc39.noarch texlive-lwarp-11:svn66259-77.fc39.noarch texlive-makecmds-11:svn15878.0-69.fc39.noarch texlive-makeindex-11:svn62517-77.fc39.x86_64 texlive-marginnote-11:svn48383-69.fc39.noarch texlive-marvosym-11:svn29349.2.2a-69.fc39.noarch texlive-mathpazo-11:svn52663-69.fc39.noarch texlive-mathspec-11:svn42773-69.fc39.noarch texlive-mathtools-11:svn63767-69.fc39.noarch texlive-mdwtools-11:svn15878.1.05.4-69.fc39.noarch texlive-memoir-11:svn65040-69.fc39.noarch texlive-metafont-11:svn66186-77.fc39.x86_64 texlive-metalogo-11:svn18611.0.12-69.fc39.noarch texlive-mflogo-11:svn42428-69.fc39.noarch texlive-mfnfss-11:svn46036-69.fc39.noarch texlive-mfware-11:svn66186-77.fc39.x86_64 texlive-microtype-11:svn66587-69.fc39.noarch texlive-minitoc-11:svn61719-69.fc39.noarch texlive-mnsymbol-11:svn18651.1.4-69.fc39.noarch texlive-modes-11:svn61719-69.fc39.noarch texlive-mparhack-11:svn59066-69.fc39.noarch texlive-mptopdf-11:svn65952-77.fc39.noarch texlive-ms-11:svn57473-69.fc39.noarch texlive-multido-11:svn18302.1.42-69.fc39.noarch texlive-natbib-11:svn20668.8.31b-69.fc39.noarch texlive-newfloat-11:svn52906-69.fc39.noarch texlive-notoccite-11:svn18129.0-69.fc39.noarch texlive-ntgclass-11:svn65522-69.fc39.noarch texlive-oberdiek-11:svn65521-77.fc39.noarch texlive-pagesel-11:svn56105-69.fc39.noarch texlive-palatino-11:svn61719-69.fc39.noarch texlive-paralist-11:svn43021-69.fc39.noarch texlive-parallel-11:svn15878.0-69.fc39.noarch texlive-parskip-11:svn58358-69.fc39.noarch texlive-pdfcol-11:svn64469-69.fc39.noarch texlive-pdfcolfoot-11:svn65512-69.fc39.noarch texlive-pdfcolmk-11:svn52912-69.fc39.noarch texlive-pdfescape-11:svn53082-69.fc39.noarch texlive-pdflscape-11:svn64851-69.fc39.noarch texlive-pdfmanagement-testphase-11:svn66532-69.fc39.noarch texlive-pdfpages-11:svn65319-69.fc39.noarch texlive-pdftex-11:svn66243-77.fc39.x86_64 texlive-pdftexcmds-11:svn55777-69.fc39.noarch texlive-pgf-11:svn65553-69.fc39.noarch texlive-picture-11:svn54867-69.fc39.noarch texlive-placeins-11:svn19848.2.2-69.fc39.noarch texlive-plain-11:svn57963-69.fc39.noarch texlive-polyglossia-11:svn65792-69.fc39.noarch texlive-psfrag-11:svn15878.3.04-69.fc39.noarch texlive-pslatex-11:svn57434-69.fc39.noarch texlive-psnfss-11:svn54694-69.fc39.noarch texlive-pspicture-11:svn15878.0-69.fc39.noarch texlive-pst-3d-11:svn17257.1.10-69.fc39.noarch texlive-pst-coil-11:svn62977-69.fc39.noarch texlive-pst-eps-11:svn15878.1.0-69.fc39.noarch texlive-pst-fill-11:svn60671-69.fc39.noarch texlive-pst-grad-11:svn15878.1.06-69.fc39.noarch texlive-pst-math-11:svn64732-69.fc39.noarch texlive-pst-node-11:svn61838-69.fc39.noarch texlive-pst-ovl-11:svn54963-69.fc39.noarch texlive-pst-plot-11:svn65346-69.fc39.noarch texlive-pst-text-11:svn49542-69.fc39.noarch texlive-pst-tools-11:svn60621-69.fc39.noarch texlive-pst-tree-11:svn60421-69.fc39.noarch texlive-pstricks-11:svn65346-69.fc39.noarch texlive-pstricks-add-11:svn65067-69.fc39.noarch texlive-ragged2e-11:svn66152-69.fc39.noarch texlive-rcs-11:svn15878.0-69.fc39.noarch texlive-realscripts-11:svn56594-69.fc39.noarch texlive-refcount-11:svn53164-69.fc39.noarch texlive-rerunfilecheck-11:svn63869-69.fc39.noarch texlive-rsfs-11:svn15878.0-69.fc39.noarch texlive-sansmath-11:svn17997.1.1-69.fc39.noarch texlive-sansmathaccent-11:svn53628-69.fc39.noarch texlive-sauerj-11:svn15878.0-69.fc39.noarch texlive-section-11:svn20180.0-69.fc39.noarch texlive-seminar-11:svn59801-69.fc39.noarch texlive-sepnum-11:svn20186.2.0-69.fc39.noarch texlive-setspace-11:svn65206-69.fc39.noarch texlive-showexpl-11:svn57414-69.fc39.noarch texlive-stringenc-11:svn52982-69.fc39.noarch texlive-subfig-11:svn15878.1.3-69.fc39.noarch texlive-symbol-11:svn61719-69.fc39.noarch texlive-tex-11:svn66186-77.fc39.x86_64 texlive-tex-ini-files-11:svn40533-69.fc39.noarch texlive-texlive-common-doc-11:svn54176-69.fc39.noarch texlive-texlive-en-11:svn66572-77.fc39.noarch texlive-texlive-msg-translations-11:svn66593-69.fc39.noarch texlive-texlive-scripts-11:svn66584-77.fc39.noarch texlive-texlive.infra-11:svn66512-77.fc39.noarch texlive-textcase-11:svn63868-69.fc39.noarch texlive-thumbpdf-11:svn62518-77.fc39.noarch texlive-times-11:svn61719-69.fc39.noarch texlive-tipa-11:svn29349.1.3-69.fc39.noarch texlive-titlesec-11:svn59845-69.fc39.noarch texlive-tools-11:svn64892-69.fc39.noarch texlive-translator-11:svn59412-69.fc39.noarch texlive-transparent-11:svn64852-69.fc39.noarch texlive-typehtml-11:svn17134.0-69.fc39.noarch texlive-ucharcat-11:svn38907-69.fc39.noarch texlive-ucs-11:svn64114-69.fc39.noarch texlive-underscore-11:svn18261.0-69.fc39.noarch texlive-unicode-data-11:svn64423-69.fc39.noarch texlive-unicode-math-11:svn61719-69.fc39.noarch texlive-uniquecounter-11:svn53162-69.fc39.noarch texlive-url-11:svn32528.3.4-69.fc39.noarch texlive-utopia-11:svn15878.0-69.fc39.noarch texlive-varwidth-11:svn24104.0.92-69.fc39.noarch texlive-xcolor-11:svn63563-69.fc39.noarch texlive-xdvi-11:svn62387-77.fc39.x86_64 texlive-xetex-11:svn66203-77.fc39.x86_64 texlive-xetexconfig-11:svn45845-69.fc39.noarch texlive-xifthen-11:svn38929-69.fc39.noarch texlive-xkeyval-11:svn63616-69.fc39.noarch texlive-xltxtra-11:svn56594-69.fc39.noarch texlive-xpatch-11:svn54563-69.fc39.noarch texlive-xstring-11:svn65551-69.fc39.noarch texlive-xunicode-11:svn30466.0.981-69.fc39.noarch texlive-zapfding-11:svn61719-69.fc39.noarch texlive-zref-11:svn62977-69.fc39.noarch tk-1:8.6.13-2.fc40.x86_64 tk-devel-1:8.6.13-2.fc40.x86_64 tre-0.8.0-42.20140228gitc2f5d13.fc40.x86_64 tre-common-0.8.0-42.20140228gitc2f5d13.fc40.noarch tre-devel-0.8.0-42.20140228gitc2f5d13.fc40.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2023c-5.fc40.noarch tzdata-java-2023c-5.fc40.noarch urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch vim-filesystem-2:9.0.2167-1.fc40.noarch xdg-utils-1.2.0~git20231511.21fb316-1.fc40.noarch xml-common-0.6.3-62.fc40.noarch xorg-x11-fonts-Type1-7.5-37.fc40.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch xpdf-libs-1:4.04-10.fc39.x86_64 xz-devel-5.4.5-1.fc40.x86_64 zlib-devel-1.2.13-5.fc40.x86_64 zziplib-0.13.72-5.fc39.x86_64 Complete! Finish: build setup for libsbml-5.20.2-2.fc40.src.rpm Start: rpmbuild libsbml-5.20.2-2.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1701820800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.65kZAa + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libsbml-5.20.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsbml-5.20.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsbml-5.20.2 + rm -rf /builddir/build/BUILD/libsbml-5.20.2-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.2-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Use-system-minizip-cmake.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-Fix-install-libpaths.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Fix-jsfile-globs.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-Fix-compatibility-with-libxml2-2.12.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find . -type f -name '*.py' -exec /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 '{}' ';' ./src/bindings/swig/swigdoc.py: updating ./src/bindings/swig/libsbmlutils.py: updating ./src/bindings/swig/argparse.py: no change ./src/bindings/python/test/xml/TestXMLTriple.py: no change ./src/bindings/python/test/xml/TestXMLToken_newSetters.py: no change ./src/bindings/python/test/xml/TestXMLToken.py: no change ./src/bindings/python/test/xml/TestXMLOutputStream.py: no change ./src/bindings/python/test/xml/TestXMLNode_newSetters.py: no change ./src/bindings/python/test/xml/TestXMLNode.py: no change ./src/bindings/python/test/xml/TestXMLNamespaces.py: no change ./src/bindings/python/test/xml/TestXMLErrorC.py: no change ./src/bindings/python/test/xml/TestXMLError.py: no change ./src/bindings/python/test/xml/TestXMLCopyAndClone.py: no change ./src/bindings/python/test/xml/TestXMLAttributesC.py: no change ./src/bindings/python/test/xml/TestXMLAttributes.py: no change ./src/bindings/python/test/sbml/TestWriteSBML.py: no change ./src/bindings/python/test/sbml/TestWriteL3SBML.py: no change ./src/bindings/python/test/sbml/TestUnit_newSetters.py: no change ./src/bindings/python/test/sbml/TestUnitKind.py: no change ./src/bindings/python/test/sbml/TestUnitDefinition_newSetters.py: no change ./src/bindings/python/test/sbml/TestUnitDefinition.py: no change ./src/bindings/python/test/sbml/TestUnit.py: no change ./src/bindings/python/test/sbml/TestTrigger.py: no change ./src/bindings/python/test/sbml/TestSyntaxChecker.py: no change ./src/bindings/python/test/sbml/TestStoichiometryMath.py: no change ./src/bindings/python/test/sbml/TestSpecies_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpeciesType_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpeciesType.py: no change ./src/bindings/python/test/sbml/TestSpeciesReference_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpeciesReference.py: no change ./src/bindings/python/test/sbml/TestSpeciesConcentrationRule.py: no change ./src/bindings/python/test/sbml/TestSpecies.py: no change ./src/bindings/python/test/sbml/TestSBase_newSetters.py: no change ./src/bindings/python/test/sbml/TestSBase.py: no change ./src/bindings/python/test/sbml/TestSBMLParentObject.py: no change ./src/bindings/python/test/sbml/TestSBMLNamespaces.py: no change ./src/bindings/python/test/sbml/TestSBMLError.py: no change ./src/bindings/python/test/sbml/TestSBMLDocument.py: no change ./src/bindings/python/test/sbml/TestSBMLConvertStrict.py: no change ./src/bindings/python/test/sbml/TestSBMLConvert.py: no change ./src/bindings/python/test/sbml/TestSBMLConstructorException.py: no change ./src/bindings/python/test/sbml/TestRule_newSetters.py: no change ./src/bindings/python/test/sbml/TestRule.py: no change ./src/bindings/python/test/sbml/TestRequiredElements.py: no change ./src/bindings/python/test/sbml/TestRequiredAttributes.py: no change ./src/bindings/python/test/sbml/TestReadSBML.py: no change ./src/bindings/python/test/sbml/TestReadFromFile9.py: no change ./src/bindings/python/test/sbml/TestReadFromFile8.py: no change ./src/bindings/python/test/sbml/TestReadFromFile7.py: no change ./src/bindings/python/test/sbml/TestReadFromFile6.py: no change ./src/bindings/python/test/sbml/TestReadFromFile5.py: no change ./src/bindings/python/test/sbml/TestReadFromFile4.py: no change ./src/bindings/python/test/sbml/TestReadFromFile3.py: no change ./src/bindings/python/test/sbml/TestReadFromFile2.py: no change ./src/bindings/python/test/sbml/TestReadFromFile1.py: no change ./src/bindings/python/test/sbml/TestReaction_newSetters.py: no change ./src/bindings/python/test/sbml/TestReaction.py: no change ./src/bindings/python/test/sbml/TestRateRule.py: no change ./src/bindings/python/test/sbml/TestPriority.py: no change ./src/bindings/python/test/sbml/TestParameter_newSetters.py: no change ./src/bindings/python/test/sbml/TestParameterRule.py: no change ./src/bindings/python/test/sbml/TestParameter.py: no change ./src/bindings/python/test/sbml/TestModifierSpeciesReference.py: no change ./src/bindings/python/test/sbml/TestModel_newSetters.py: no change ./src/bindings/python/test/sbml/TestModel.py: no change ./src/bindings/python/test/sbml/TestListOf.py: no change ./src/bindings/python/test/sbml/TestL3Unit.py: no change ./src/bindings/python/test/sbml/TestL3Trigger.py: no change ./src/bindings/python/test/sbml/TestL3SpeciesReference.py: no change ./src/bindings/python/test/sbml/TestL3Species.py: no change ./src/bindings/python/test/sbml/TestL3Reaction.py: no change ./src/bindings/python/test/sbml/TestL3Parameter.py: no change ./src/bindings/python/test/sbml/TestL3Model.py: no change ./src/bindings/python/test/sbml/TestL3LocalParameter.py: no change ./src/bindings/python/test/sbml/TestL3KineticLaw.py: no change ./src/bindings/python/test/sbml/TestL3Event.py: no change ./src/bindings/python/test/sbml/TestL3Compartment.py: no change ./src/bindings/python/test/sbml/TestKineticLaw_newSetters.py: no change ./src/bindings/python/test/sbml/TestKineticLaw.py: no change ./src/bindings/python/test/sbml/TestInternalConsistencyChecks.py: no change ./src/bindings/python/test/sbml/TestInitialAssignment_newSetters.py: no change ./src/bindings/python/test/sbml/TestInitialAssignment.py: no change ./src/bindings/python/test/sbml/TestGetMultipleObjects.py: no change ./src/bindings/python/test/sbml/TestFunctionDefinition_newSetters.py: no change ./src/bindings/python/test/sbml/TestFunctionDefinition.py: no change ./src/bindings/python/test/sbml/TestEvent_newSetters.py: no change ./src/bindings/python/test/sbml/TestEventAssignment_newSetters.py: no change ./src/bindings/python/test/sbml/TestEventAssignment.py: no change ./src/bindings/python/test/sbml/TestEvent.py: no change ./src/bindings/python/test/sbml/TestDelay.py: no change ./src/bindings/python/test/sbml/TestCopyAndClone.py: no change ./src/bindings/python/test/sbml/TestConstraint_newSetters.py: no change ./src/bindings/python/test/sbml/TestConstraint.py: no change ./src/bindings/python/test/sbml/TestConsistencyChecks.py: no change ./src/bindings/python/test/sbml/TestCompartment_newSetters.py: no change ./src/bindings/python/test/sbml/TestCompartmentVolumeRule.py: no change ./src/bindings/python/test/sbml/TestCompartmentType_newSetters.py: no change ./src/bindings/python/test/sbml/TestCompartmentType.py: no change ./src/bindings/python/test/sbml/TestCompartment.py: no change ./src/bindings/python/test/sbml/TestAssignmentRule.py: no change ./src/bindings/python/test/sbml/TestAncestor.py: no change ./src/bindings/python/test/sbml/TestAlgebraicRule.py: no change ./src/bindings/python/test/math/TestWriteMathML.py: no change ./src/bindings/python/test/math/TestValidASTNode.py: no change ./src/bindings/python/test/math/TestReadMathML.py: no change ./src/bindings/python/test/math/TestMathReadFromFile2.py: no change ./src/bindings/python/test/math/TestMathReadFromFile1.py: no change ./src/bindings/python/test/math/TestL3FormulaParserC.py: no change ./src/bindings/python/test/math/TestASTNode.py: no change ./src/bindings/python/test/annotation/TestValidation.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotationC.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotation2.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotation.py: no change ./src/bindings/python/test/annotation/TestModelHistory_newSetters.py: no change ./src/bindings/python/test/annotation/TestModelHistory.py: no change ./src/bindings/python/test/annotation/TestModelCreator_newSetters.py: no change ./src/bindings/python/test/annotation/TestL3ModelHistory.py: no change ./src/bindings/python/test/annotation/TestDate_newSetters.py: no change ./src/bindings/python/test/annotation/TestCVTerms_newSetters.py: no change ./src/bindings/python/test/annotation/TestCVTerms.py: no change ./src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py: no change ./src/bindings/python/test.py: updating ./src/bindings/python/doc-converter/test/run.py: updating ./src/bindings/python/doc-converter/test/cases/test_write.py: updating ./src/bindings/python/doc-converter/test/cases/test_test.py: updating ./src/bindings/python/doc-converter/test/cases/test_rewrite.py: updating ./src/bindings/python/doc-converter/test/cases/test_read.py: updating ./src/bindings/python/doc-converter/test/cases/test_args.py: updating ./src/bindings/python/doc-converter/rewrite_pydoc.py: updating ./src/bindings/python/doc-converter/prettytable.py: updating ./src/bindings/python/doc-converter/argparse.py: no change ./examples/python/validateSBMLWithCallback.py: updating ./examples/python/validateSBML.py: updating ./examples/python/unsetNotes.py: updating ./examples/python/unsetAnnotation.py: updating ./examples/python/translateMath.py: updating ./examples/python/stripPackage.py: updating ./examples/python/stringInput.py: updating ./examples/python/setNamesFromIds.py: updating ./examples/python/setIdFromNames.py: updating ./examples/python/replaceOneFD.py: updating ./examples/python/render/removeRenderInformation.py: no change ./examples/python/render/printRenderInformation.py: no change ./examples/python/render/addRenderInformation.py: no change ./examples/python/renameSId.py: no change ./examples/python/readSBML.py: updating ./examples/python/qual/qual_example1.py: updating ./examples/python/promoteParameters.py: updating ./examples/python/printsupported.py: updating ./examples/python/printUnits.py: updating ./examples/python/printSBML.py: updating ./examples/python/printRegisteredPackages.py: updating ./examples/python/printNotes.py: updating ./examples/python/printMath.py: updating ./examples/python/printAnnotation.py: updating ./examples/python/multi/printMulti.py: no change ./examples/python/multi/multi_example3.py: no change ./examples/python/multi/multi_example2.py: no change ./examples/python/multi/multi_example1.py: no change ./examples/python/layout/example1.py: updating ./examples/python/layout/example1-L3.py: updating ./examples/python/layout/convertLayout.py: updating ./examples/python/inlineInitialAssignments.py: updating ./examples/python/inlineFunctionDefinitions.py: updating ./examples/python/groups/print_groups.py: updating ./examples/python/groups/groups_example1.py: updating ./examples/python/getAllElementsWithNotes.py: updating ./examples/python/fbc/print_gene_product_association.py: updating ./examples/python/fbc/fbc_example1.py: updating ./examples/python/fbc/convertFbcToCobra.py: updating ./examples/python/fbc/convertCobraToFbc.py: updating ./examples/python/evaluateCustomMath.py: updating ./examples/python/echoSBML.py: updating ./examples/python/dyn/dyn_example2.py: no change ./examples/python/dyn/dyn_example1.py: no change ./examples/python/distrib/createStatisticsExample .py: updating ./examples/python/distrib/createNormalExample.py: updating ./examples/python/createSimpleModel.py: updating ./examples/python/createExampleSBML.py: updating ./examples/python/convertSBML.py: updating ./examples/python/comp/flattenModel.py: updating ./examples/python/callExternalValidator.py: updating ./examples/python/arrays/flattenArrays.py: updating ./examples/python/arrays/CreateArrays2.py: no change ./examples/python/arrays/CreateArrays1.py: no change ./examples/python/append_to_note.py: updating ./examples/python/appendAnnotation.py: updating ./examples/python/addingEvidenceCodes_2.py: updating ./examples/python/addingEvidenceCodes_1.py: updating ./examples/python/add_function_definition.py: updating ./examples/python/addModelHistory.py: updating ./examples/python/addCustomValidator.py: updating ./examples/python/addCVTerms.py: updating ./docs/src/utilities/split-documentation-classes.py: no change ./docs/src/utilities/pythondocpreprocessor.py: updating ./docs/src/utilities/generate-pkg-stylesheet.py: updating ./docs/src/utilities/generate-extensions-summary.py: updating ./docs/src/utilities/generate-cplusplus-class-names.py: updating ./docs/src/utilities/generate-converters-list.py: updating ./docs/src/utilities/generate-class-name-list.py: updating ./docs/src/utilities/compare-constants.py: updating ./docs/src/utilities/compare-classes.py: updating ./docs/src/python-substitutions/ostringstream.py: no change ./docs/src/python-substitutions/ostream.py: no change ./docs/src/python-substitutions/libsbml.py: no change ./docs/src/python-substitutions/SBaseList.py: no change ./docs/src/python-substitutions/SBMLNamespacesList.py: no change ./docs/src/python-substitutions/QualPkgNamespaces.py: no change ./docs/src/python-substitutions/MultiPkgNamespaces.py: no change ./docs/src/python-substitutions/ModelCreatorList.py: no change ./docs/src/python-substitutions/LayoutPkgNamespaces.py: no change ./docs/src/python-substitutions/GroupsPkgNamespaces.py: no change ./docs/src/python-substitutions/FbcPkgNamespaces.py: no change ./docs/src/python-substitutions/DateList.py: no change ./docs/src/python-substitutions/CompPkgNamespaces.py: no change ./docs/src/python-substitutions/CVTermList.py: no change ./docs/src/python-substitutions/ASTNodeList.py: no change ./docs/src/filters/doc-filter-python.py: updating ./docs/src/filters/doc-filter-csharp.py: updating ./docs/src/filters/doc-filter-c.py: updating ./dev/utilities/sboTree/sbo2cpp.py: updating ./dev/utilities/errorTable/writeErrorTable.py: updating ./dev/utilities/count-lines-of-code/process_count.py: updating + grep -e 'This file was automatically generated by SWIG' -r -l . + xargs --no-run-if-empty rm -v + sed -r -i 's|(set\(PERL_PACKAGE_INSTALL_DIR.*/perl5)/site_perl.*\)|\1/vendor_perl)|' src/bindings/perl/CMakeLists.txt + sed -r -i 's|(set\(RUBY_PACKAGE_INSTALL_DIR.*/ruby)/site_ruby.*\)|\1/vendor_ruby)|' src/bindings/ruby/CMakeLists.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.5k44fq + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsbml-5.20.2 + mkdir -p build + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ python3-config --abiflags ++ python3-config --abiflags + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.12.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.1.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Looking for sin in m -- Looking for sin in m - found -- Performing Test LIBXML_LIBXML_TEST -- Performing Test LIBXML_LIBXML_TEST - Success -- LIBXML_LIBXML_TEST = 1 -- Found LIBXML: /usr/lib64/libxml2.so (found version "2.12.3") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Found BZ2: /usr/lib64/libbz2.so (found version "1.0.8") -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Checking for module 'minizip' -- Found minizip, version 3.0.10 -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Success -- Found CHECK: /usr/lib64/libcheck.so (found version "0.2") -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonInterp: /usr/bin/python3 (found version "3.12.1") -- Found Perl: /usr/bin/perl (found version "5.38.2") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.38.2") -- Found PythonLibs: /usr/lib64/libpython3.12.so (found version "3.12.1") -- Found Ruby: /usr/bin/ruby (found suitable version "3.2.2", minimum required is "1.8.0") -- ---------------------------------------------------------------------- libSBML version 5.20.2 ---------------------------------------------------------------------- More information and the latest version are available online at https://sbml.org/software/libsbml/ Please report problems using the issue tracker at https://github.com/sbmlteam/libsbml/issues To contact the developers directly, email libsbml-team@googlegroups.com Configured on host '0dfa15c9358d412f83c7579ddff9eeca' host type = Linux host operating system = Linux 6.3.5-200.fc38.x86_64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/gcc CXX = /usr/bin/g++ CPPFLAGS = -DLINUX CFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 4.1.1) -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = -- Using R = /usr/bin/R -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'arrays' package = OFF -- SBML 'comp' package = ON -- SBML 'distrib' package = OFF -- SBML 'dyn' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- SBML 'req' package = OFF -- SBML 'spatial' package = OFF -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done (4.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH CSHARP_COMPILER INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsbml-5.20.2/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/cmake -S/builddir/build/BUILD/libsbml-5.20.2 -B/builddir/build/BUILD/libsbml-5.20.2/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsbml-5.20.2/build/CMakeFiles 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro ‘COMP_CREATE_NS’ 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro ‘COMP_CREATE_NS’ 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro ‘COMP_CREATE_NS’ 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro ‘COMP_CREATE_NS’ 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro ‘COMP_CREATE_NS’ 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro ‘COMP_CREATE_NS’ 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro ‘COMP_CREATE_NS’ 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro ‘COMP_CREATE_NS’ 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro ‘COMP_CREATE_NS’ 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro ‘COMP_CREATE_NS’ 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro ‘COMP_CREATE_NS’ 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro ‘COMP_CREATE_NS’ 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro ‘COMP_CREATE_NS’ 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro ‘COMP_CREATE_NS’ 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Port.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro ‘COMP_CREATE_NS’ 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro ‘COMP_CREATE_NS’ 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro ‘COMP_CREATE_NS’ 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro ‘COMP_CREATE_NS’ 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro ‘COMP_CREATE_NS’ 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro ‘COMP_CREATE_NS’ 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro ‘COMP_CREATE_NS’ 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro ‘COMP_CREATE_NS’ 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:687:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 687 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:952:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 952 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1132:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1132 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1339:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1339 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘UserDefinedConstraint* FbcModelPlugin::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1578:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1578 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2408:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 2408 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:687:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 687 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:952:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 952 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1132:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1132 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1339:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1339 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘UserDefinedConstraint* FbcModelPlugin::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1578:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1578 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2408:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 2408 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints 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-o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.h:52, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp: In member function ‘KeyValuePair* FbcSBasePlugin::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:233:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.h:52, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp: In member function ‘KeyValuePair* FbcSBasePlugin::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:233:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:957:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 957 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:994:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1031:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1031 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1127:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1127 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1135:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1135 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1143:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1143 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1151:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1151 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:957:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 957 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:994:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1031:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1031 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1127:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1127 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1135:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1135 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1143:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1143 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1151:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1151 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp:1189:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1189 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp:1189:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1189 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1397:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1397 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1493:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1397:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1397 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1493:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1116:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1116 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1212:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1116:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1116 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1212:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:218:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 218 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:233:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:248:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 248 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:994:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:218:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 218 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:233:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:248:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 248 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:994:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/KeyValuePair.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/KeyValuePair.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘KeyValuePair* ListOfKeyValuePairs::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:326:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 326 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual SBase* ListOfKeyValuePairs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:412:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 412 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘KeyValuePair* ListOfKeyValuePairs::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:326:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 326 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual SBase* ListOfKeyValuePairs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:412:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 412 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h:59, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘UserDefinedConstraintComponent* ListOfUserDefinedConstraintComponents::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:274:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 274 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraintComponents::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:384:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 384 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h:59, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘UserDefinedConstraintComponent* ListOfUserDefinedConstraintComponents::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:274:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 274 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraintComponents::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:384:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 384 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘UserDefinedConstraint* ListOfUserDefinedConstraints::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:264:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 264 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraints::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:409:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 409 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘UserDefinedConstraint* ListOfUserDefinedConstraints::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:264:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 264 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraints::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:409:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 409 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.h:139, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:1443:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1443 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:1562:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1562 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.h:139, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:1443:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1443 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:1562:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1562 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘UserDefinedConstraintComponent* UserDefinedConstraint::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:556:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 556 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘UserDefinedConstraintComponent* UserDefinedConstraint::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:556:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 556 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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-MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd 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src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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'/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension 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/builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/TextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:587:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 587 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:587:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 587 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function ‘virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro ‘MULTI_CREATE_NS’ 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function ‘virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro ‘MULTI_CREATE_NS’ 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:325:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 325 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:352:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 352 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:408:4: note: in expansion of macro ‘MULTI_CREATE_NS’ 408 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:325:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 325 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:352:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 352 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:408:4: note: in expansion of macro ‘MULTI_CREATE_NS’ 408 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:484:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 484 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:739:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:484:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 484 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:739:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:299:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 299 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:299:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 299 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function ‘virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function ‘virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function ‘virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function ‘virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:454:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 454 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:611:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 611 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:768:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 768 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:925:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 925 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1182:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 1182 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1630 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /bmake[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' uilddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:454:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 454 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:611:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 611 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:768:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 768 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:925:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 925 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1182:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 1182 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1630 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function ‘virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function ‘virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.h:84, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:549:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 549 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* SpeciesFeature::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:762:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 762 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1385:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1385 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1392:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1392 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.h:84, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:549:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 549 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* SpeciesFeature::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:762:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 762 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1385:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1385 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1392:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1392 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:432:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 432 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:623:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 623 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1004:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1004 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:432:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 432 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:623:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 623 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1004:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1004 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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'/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.h:107, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.h:107, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.h:98, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.h:98, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.h:91, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.h:91, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator 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'/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:540:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 540 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:566:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 566 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1320:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1320 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1322:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1322 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘LineEnding::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1494:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1494 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1398:16: note: ‘numErrs’ was declared here 1398 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:540:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 540 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:566:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 566 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1320:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1320 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1322:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1322 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘LineEnding::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1494:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1494 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1398:16: note: ‘numErrs’ was declared here 1398 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 405 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 405 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:942:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 942 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:900:16: note: ‘numErrs’ was declared here 900 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:942:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 942 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:900:16: note: ‘numErrs’ was declared here 900 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:892:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 892 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:850:16: note: ‘numErrs’ was declared here 850 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:892:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 892 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:850:16: note: ‘numErrs’ was declared here 850 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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&& /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Rectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:73: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:73: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Transformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Transformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Transformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Transformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util/RenderUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/CVTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:39: In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 23 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:469:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:475:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:481:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:487:28: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:487:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:506:15: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:512:30: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:512:15: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:39: In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 23 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:469:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:475:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:481:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:487:28: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:487:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:506:15: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:512:30: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' ’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:512:15: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/ModelCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/ModelCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLConverterRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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'/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLIdConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLLevel1Version1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch 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&& /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRateRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLReactionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp In file included from /usr/include/c++/13/string:51, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.h:96, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp:45: In function ‘std::__copy_move::__copy_m(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’, inlined from ‘std::__copy_move_a2(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, AssignmentRule**, AssignmentRule*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**, std::allocator&)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::vector(std::vector > const&)’ at /usr/include/c++/13/bits/stl_vector.h:603:31, inlined from ‘reorderRules(std::vector >&)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp:173:42: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /usr/include/c++/13/string:51, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.h:96, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp:45: In function ‘std::__copy_move::__copy_m(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’, inlined from ‘std::__copy_move_a2(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, AssignmentRule**, AssignmentRule*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**, std::allocator&)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::vector(std::vector > const&)’ at /usr/include/c++/13/bits/stl_vector.h:603:31, inlined from ‘reorderRules(std::vector >&)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp:173:42: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ISBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/Compartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp: In member function ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6447 | sprintf(newId, "constraint_%u", n); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:20: note: directive argument in the range [0, 4294967294] 6447 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:42: In function ‘sprintf’, inlined from ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp: In member function ‘Model::createEventUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6650 | sprintf(newId, "event_%u", countEvents); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:20: note: directive argument in the range [0, 4294967294] 6650 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘sprintf’, inlined from ‘Model::createEventUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp: In member function ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6447 | sprintf(newId, "constraint_%u", n); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:20: note: directive argument in the range [0, 4294967294] 6447 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:42: In function ‘sprintf’, inlined from ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp: In member function ‘Model::createEventUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6650 | sprintf(newId, "event_%u", countEvents); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:20: note: directive argument in the range [0, 4294967294] 6650 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘sprintf’, inlined from ‘Model::createEventUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Priority.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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'/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/SBMLDocument.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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-Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o -MF CMakeFiles/sbml.dir/sbml/UnitKind.c.o.d -o CMakeFiles/sbml.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/UnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml 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CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/ASTNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static int DefinitionURLRegistry::addDefinitionURL(const std::string&, int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o -MF 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CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static int DefinitionURLRegistry::addDefinitionURL(const std::string&, int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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'/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 53%] Building C object src/CMakeFiles/sbml.dir/sbml/util/Stack.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/IdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML 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/builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/L2v4CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/CompressCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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src/CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/InputDecompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/OutputCompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zipfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zipfstream.cpp: In function ‘void* zipopen(const char*, const char*, int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zipfstream.cpp:545:41: error: cannot convert ‘long unsigned int*’ to ‘uint32_t*’ {aka ‘unsigned int*’} 545 | filetime(filenameinzip,&zi.tmz_date,&zi.dosDate); | ^~~~~~~~~~~ | | | long unsigned int* /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zipfstream.cpp:97:64: note: initializing argument 3 of ‘long unsigned int filetime(const char*, tm_zip*, uint32_t*)’ 97 | unsigned long filetime(const char* f, tm_zip* tmzip, uint32_t* dt); | ~~~~~~~~~~^~ make[2]: *** [src/CMakeFiles/sbml-static.dir/build.make:5861: src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:1605: src/CMakeFiles/sbml-static.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/bzfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zipfstream.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zipfstream.cpp: In function ‘void* zipopen(const char*, const char*, int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zipfstream.cpp:545:41: error: cannot convert ‘long unsigned int*’ to ‘uint32_t*’ {aka ‘unsigned int*’} 545 | filetime(filenameinzip,&zi.tmz_date,&zi.dosDate); | ^~~~~~~~~~~ | | | long unsigned int* /builddir/build/BUILD/libsbml-5.20.2/src/sbml/compress/zipfstream.cpp:97:64: note: initializing argument 3 of ‘long unsigned int filetime(const char*, tm_zip*, uint32_t*)’ 97 | unsigned long filetime(const char* f, tm_zip* tmzip, uint32_t* dt); | ~~~~~~~~~~^~ make[2]: *** [src/CMakeFiles/sbml.dir/build.make:5861: src/CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o] Error 1 make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: *** Waiting for unfinished jobs.... make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: *** [CMakeFiles/Makefile2:1579: src/CMakeFiles/sbml.dir/all] Error 2 make: *** [Makefile:169: all] Error 2 error: Bad exit status from /var/tmp/rpm-tmp.5k44fq (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.5k44fq (%build) Finish: rpmbuild libsbml-5.20.2-2.fc40.src.rpm Finish: build phase for libsbml-5.20.2-2.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root/var/log/dnf.log ERROR: Exception(/var/lib/copr-rpmbuild/results/libsbml-5.20.2-2.fc40.src.rpm) Config(fedora-rawhide-x86_64) 11 minutes 39 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 0dfa15c9358d412f83c7579ddff9eeca -D /var/lib/mock/fedora-rawhide-x86_64-1703045989.375956/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.nqv9zhkn:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/originals/libsbml.spec' Copr build error: Build failed